Gene detail

Detail information of GWHGAAEX005550/evm.TU.scaffold_166.10

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695062577\|ref\|XP_009419762.1\|	4.31E-77	PREDICTED: SCAR-like protein 2 isoform X2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5QNA6\|SCRL2_ORYSJ	4.00E-69	SCAR-like protein 2
trEMBL	tr\|M0UB73\|M0UB73_MUSAM	8.00E-77	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP21650_001}
trEMBL	tr\|M0UB73\|M0UB73_MUSAM	1.00E-26	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP21650_001}
TAIR	AT2G38440	2.00E-58	SCAR homolog 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000171	429844	488212	+

Transcript Sequence
>GWHTAAEX005550 ATGCCTCTGGTGCGATTTGAGTTGAAGAATGAGTACGGCTTGGGAGATCCCAGGCTTTATCAGAGCACCTCAAAGAAGGATGAGGATCCCAGAGACATCTTGAGTGGAGTCGCCGTGTCTGGCCTTGTTGGGATCCTGCGGCAACTCGGAGATCTTGCTGAGTTTGCTGCGGTTATTTTCCATGATGTACATCAACAAGTGATGATCACAGCTGCTAGAGGACATAAAATACTGAATTGTATACAGAAAATTGAAACTACACTTCCACACTTTGAGAAGGATGTTCAAGAACAGCAAAGTCACATCCATTTTGCTTATATATCAGGTTGTGACTGGCATGCTAATATCCAAACTAGCCAAACACAACTTTTAGGCAACGATTTACCAGACTTTATGGCGGATTCTTATGAAGAGTGTCGTGACCCACCACGTCTCCACTTACTTGATAAATTTGACAGTGCTGGTGCTGGAGCTTGTCTGAAGAGATACTCAGATCCATCTTATTTTCGATTGTTAAAGGCTAGTCTAGAGTCTGTAACGGCTGAGAAAGTACACAAGGGAAATAAGGTTCAAAGGAAGAAGAGGCAAAAATCAAAAGGAATGGGTGGATTATCTCGCCGTTCTATAAATACGACCATGCATGGTAGGAGCATGTTGTTTGCTTCGTCATTCAGAAAGGAGCCAAAATTTTCAGTTGATAATGCATCCATTTCTGACGCATTGTCAACCTCTGGTTTCACAGCCGAGCTCTCAAATTTCACTTCAGCCAAAATGTCAGATTGTCTAGAAATGCAGAGTGTGCCTTCATCAATGTCCAAAGAGCTATATGATGATATTTCTGCTACAGATTCAGAAAGCACTTTAAAGGTTGATTGCATTATCAATAGTGACAATAAAGCTACTGCCAATAAGTATGTAATGCAAGATTCATTGCACCAACGTAGTGACGACCCTTTCTCATCTTCAATAAGTTGTTGTGAAACGACTGAGATGCTGGAGCCTGTCAACCAGACTCATGAAATACCCGAGGACAGGATAAAAAATCTAGATGCTGTAGAAATGAGGTCAACATTATTAAAAGGGAATCATTTAACTGAAAACCTAGGAATACAAGTGGAACATAATTCTAGATCATTGACCTGGGATGAAAGGGCAACTGATAACATGTGTGCATGGGAAAAATCAGTCTCCAGTTTGTCTTCTTTTACTGCATCAAAAGAAAATAAAACGGATGATTCTGAAACGCAAGATAATGGTGTTTCCAGCATGTATTTGGCTGCATCATATGAAAAGGCTGAACTTATTGAGCCTGCATGCTCTGAATTTGCTGATGACTGTATTCCTTATAGGCCTATAGATTCAAATTTATTTCTTACAACTCTTGAAACATCAAATCCACATAGTGAATTGGATGATACTGGAACACATAATCATGAAAATTCCTTGCTTGATACTGTGAAGATGACACTACCTTTTTCTTCAGGTGTCCAAGTTAACGAACCCACATGTCAGTTAGACAAGCACATGGATGCCAGTAGTGCTTTGTACTCTGAGGCTCAAACAAACTTTGAGTACCACCCTGGGCAAGAAGTGCTATTGTTACCTTATCCTAGTGCTAGTGAGATGGAATGCAAAATTATCAAGACTAGGGATGTAATCACCAGTTCTGACGGTGTTGGTGGTGTAGACGCTGAAATTGCTCATGAAGCTTGCACTTTATCAAAACAACTTTCTCGACAAGTCATTATTGACCATATGCAGTCCTATGGTTGTTCTGAATCAGCTCATAGGCTGCATTATTCTGTTGAAAATGCTGTTTATGAATGCCCAACTTCTAGTAGTTCTATGAAAAATAATTTTAATAATATCAACAGTCCTAATTGTCTTGGGGTTATCATGCCAATTTTACAGTATGAAGTTATTCAAGTGAATCCGCCTAAACAATCTTCATTTCAGGAGAATTTTGGTGATGCCTTTGCTAAAACTGTTGGTGGAGAAGACTTACTCAGGGAGCACCAAATTAAAAAGATAATGGATTCCACCGCAGATTCAAATTGTCTGGGGACAGACCCTCAGAGTATCATTGAAAATGTTATTGCTGTTTCAAATTCGGATTGCCTGGATTCTGAAACTTGCGTTTCATTTCTTAACAGTGCTCCTTGTTCTGTGATTAACATTACAAGTATACATGCTGTGGTAATTGATGGGCATGGGGTTCAGCCTTATGAATCACATCTCCAGGATTCTATCTGCATTTCGTCTGCAAAAACTGCTTGTGAAAAGGAGGTATTTTGTGAATATCAAACTAAACATGAAATGTTGTCAAGAGATGACTCAAAATGTGAACTGAACAAGTATCTAAGCGATATGGAAATGGTAATATCTAGTTTAAACTCGAAAGAACTGGAATCTGAAACACTCGTAGAGTCTTCTAGCAATGCTTCTGATCCTGCTGGGGCTATCATCTCTGGTACGGGAGTTGTAGTTGCTAATTGGATTCCACCTGAAGAATCCTTGCTGCAGGAGTCTTTTGGTGATGCTTCTGCTGAAACTGCTAATGAAAAAGTGATGTGTGAACACCAAACTAAAGATGGAGCAGAGTCAATGGTTGACTTTAACTGTCAAGAGACTGAATATCAAAGGAGTACGGAAAAAGTGATGTCTGCTTCAATATTTAATGACCCCAATTCTGAAACTCCACCTGAAGAATCTTTGCTGCAGGATTCTTTTGGTGATGCTTCTACTGAAACTGTTAGTGAAAAAGTGATGTGTGAAAACCTTACTAAAGATGGAGCAGAGTCAATCGCTGACTTCAGCTGTCAAGAGTCTGAATATCAAAGGAGTACGGAAAAAGTGATTGCTGCTTCAATATTTAATGACCCCGATTCTGAAACTCATATAGCTTCATGTGGTTTCTCAGATGATTATGCATCCCAAATATTATGTGGTCTGAAAATTTCGGATGTCACAAACAGCACAAGTTTGGTAAACCTTAGTATTGATGCCACTATGTACAGAAGTCCTATTGATGTATTTTTAACAAATAATGTTACTGAAGATCCTCATAAAAATATTATATCTTCCCAGTTAAGTAATGCATCCATGATCTTTCCTTCTGATGCTTCTGCAACCACTGTAGACTTTCAAGGTTTTCCAGTTGACTCCAGAAAATCTTTGATAAATATTTGGTCCAATGGAGGGCTTTTGGGACTTGAACCTTCAAAACCTCCAGATATTAATTCTTCAAATATTTTTGATATTGATGGTATTTGTAATGACAGATCAACCGGAAACCCAAAATTAACTGTATTAGGTAGCAGGAATGAATTGAAAAAGTTGTTTTTGGATTCGCTCGAACAAAATAGCATGTGCAAAATATCTGATGAACAAAGCTATTCTATGCTCTCCAAACAGCATTCTAAAAATTCCATTCAAACTTCTGCACTTGTTGGTACTGCTTCAGAAATGGGAGTTCAGGGAATAGAAGGCACCGATATTTTTTCTGAAGCTGATGTTTACTCCAAAAATGAGGCTGAATTCGTTGTGTCAGAGGACAACAATGTTGGTATATCAGTTGGCTTTTCATGTCTTGCACATAAATCTATTGTGAATACTCTTCGAAGTAAATCATCAATAGCTGGTGTTTCTCCATTATCTGAACAGGAGAATAATGATGTTCAAAAATTGCATGGTTCTAAAATATATATCAAAGATGTTGAAAGGCCCAAGCTAGCAGTAATGTCAGTTCAGGTAAATAATTTGAGAAACAGTGATGATTTTGCACTTGGATTTTCAGAGATGCTTGTATCTCCCAGTGTAGATTCTTCAGAATGTCAGTCTCCTCCTCTAGAACATATGAAAGCCTCTTTTGAACCAATGAATAATACAGACGCCTCCAAGCTGAAATTGGAGTTTTTTAGTCAGCAACGAGGAAACACAGGAGATAAGATGTTTCCTTCATTTCAGTTACTCGCTGAATCATTCCACCCTCTGTTGGACGGTGCTTTGGATTCTGATGATGACATCTTCTGCAGATCCTGTCCATATTCTTCTGATGATCTTCTCACTTTAAATTCAGATTCAGATGCTGAGATATGGGGAGATAATGAAAGAGATGCTTATCACAAAATTTAG

Network for GWHGAAEX005550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX005550
MPLVRFELKNEYGLGDPRLYQSTSKKDEDPRDILSGVAVSGLVGILRQLGDLAEFAAVIFHDVHQQVMITAARGHKILNCIQKIETTLPHFEKDVQEQQSHIHFAYISGCDWHANIQTSQTQLLGNDLPDFMADSYEECRDPPRLHLLDKFDSAGAGACLKRYSDPSYFRLLKASLESVTAEKVHKGNKVQRKKRQKSKGMGGLSRRSINTTMHGRSMLFASSFRKEPKFSVDNASISDALSTSGFTAELSNFTSAKMSDCLEMQSVPSSMSKELYDDISATDSESTLKVDCIINSDNKATANKYVMQDSLHQRSDDPFSSSISCCETTEMLEPVNQTHEIPEDRIKNLDAVEMRSTLLKGNHLTENLGIQVEHNSRSLTWDERATDNMCAWEKSVSSLSSFTASKENKTDDSETQDNGVSSMYLAASYEKAELIEPACSEFADDCIPYRPIDSNLFLTTLETSNPHSELDDTGTHNHENSLLDTVKMTLPFSSGVQVNEPTCQLDKHMDASSALYSEAQTNFEYHPGQEVLLLPYPSASEMECKIIKTRDVITSSDGVGGVDAEIAHEACTLSKQLSRQVIIDHMQSYGCSESAHRLHYSVENAVYECPTSSSSMKNNFNNINSPNCLGVIMPILQYEVIQVNPPKQSSFQENFGDAFAKTVGGEDLLREHQIKKIMDSTADSNCLGTDPQSIIENVIAVSNSDCLDSETCVSFLNSAPCSVINITSIHAVVIDGHGVQPYESHLQDSICISSAKTACEKEVFCEYQTKHEMLSRDDSKCELNKYLSDMEMVISSLNSKELESETLVESSSNASDPAGAIISGTGVVVANWIPPEESLLQESFGDASAETANEKVMCEHQTKDGAESMVDFNCQETEYQRSTEKVMSASIFNDPNSETPPEESLLQDSFGDASTETVSEKVMCENLTKDGAESIADFSCQESEYQRSTEKVIAASIFNDPDSETHIASCGFSDDYASQILCGLKISDVTNSTSLVNLSIDATMYRSPIDVFLTNNVTEDPHKNIISSQLSNASMIFPSDASATTVDFQGFPVDSRKSLINIWSNGGLLGLEPSKPPDINSSNIFDIDGICNDRSTGNPKLTVLGSRNELKKLFLDSLEQNSMCKISDEQSYSMLSKQHSKNSIQTSALVGTASEMGVQGIEGTDIFSEADVYSKNEAEFVVSEDNNVGISVGFSCLAHKSIVNTLRSKSSIAGVSPLSEQENNDVQKLHGSKIYIKDVERPKLAVMSVQVNNLRNSDDFALGFSEMLVSPSVDSSECQSPPLEHMKASFEPMNNTDASKLKLEFFSQQRGNTGDKMFPSFQLLAESFHPLLDGALDSDDDIFCRSCPYSSDDLLTLNSDSDAEIWGDNERDAYHKI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.320
SRP064423	SRR2545915	Juvenile tuber	21.210
SRP108465	SRR5643513	five period of Gastrodia elata	6.590
	SRR5643514	five period of Gastrodia elata	7.240
	SRR5643515	five period of Gastrodia elata	8.130
	SRR5643524	five period of Gastrodia elata	7.070
	SRR5643525	five period of Gastrodia elata	7.760
	SRR5643528	five period of Gastrodia elata	7.390
	SRR5643658	five period of Gastrodia elata	7.830
	SRR5643659	five period of Gastrodia elata	11.380
	SRR5643660	five period of Gastrodia elata	10.440
	SRR5643661	five period of Gastrodia elata	9.340
	SRR5643662	five period of Gastrodia elata	7.790
	SRR5643663	five period of Gastrodia elata	10.760
	SRR5643664	five period of Gastrodia elata	7.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.830
SRP279888	Gastro	Gastrodia elata tuber	8.70
	Juven	Juvenile tuber	10.48
	Mother_Gastro	Mother tuber of Gastrodia elata	4.33
	Mother_Juven	Mother tuber of Juvenile	6.86