Gene detail

Detail information of GWHGAAEX005555/evm.TU.scaffold_166.17

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	3.00E-110	FOG: PPR repeat
nr	gi\|743891143\|ref\|XP_010911247.1\|	4.36E-152	PREDICTED: putative pentatricopeptide repeat-containing protein At1g26500 [Elaeis guineensis]
Swissprot	tr\|Q9FZD4\|PPR59_ARATH	9.00E-111	Putative pentatricopeptide repeat-containing protein At1g26500
trEMBL	tr\|A0A067KYM3\|A0A067KYM3_JATCU	9.00E-132	Uncharacterized protein {ECO:0000313\|EMBL:KDP41291.1}
TAIR	AT1G26500	3.00E-110	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000171	700758	713288	-

Transcript Sequence
>GWHTAAEX005555 ACTATATCTTATAATGGTATTGCCGGAAGGAGACTCCCCTTGGTGAGGAGCTTGAGTACCACCACATCGTTCTATTGGTATAATAGTTAGGGAGTCCGGTCTTCATGTTTTATTCTGCTGCAGTATTGGGTCAGTTTAATAAACTCCTTTACTAAAACCACCACTAACTTTCCTGCATCGCCTCACAGGCGAGGAAGGGCAGTCCCTCCCCCTCTTCCCTGACATCAGCCGGTAGCAACAACGGCATTGGTCATCCAAAACCGCCTCCGGCCATCTCCATCGCCGGAATCTATCCTTATCGACCCCTCCCTCCTCCTCCGCCTCTGCACAGTCCTCCACCAGCACCGTCTCTCCCCCGTCCCCAAGCTCCATTCGCACCTCCTCCGCCTTCCCCTCCCCTCCGACCCTCCCTCCCTCCTCTCCCTCCTCTTCCACGTCTGCACCCGCTTCCCCTTCTCATGGCGCCCCCCTCACAGCTTCCACCTCTTCCTCCTTTACCGCCACCCCTCCTTCTCCCTCTCCCCCACCACCGCCGCCAAGCTCCTCGACGTATACGGCAAATCCCGCAACGTCGATCTCCTATGGACCCACCTCCTCCTCATGGCCGATCGCGGCCTCCTCTCCCTCTCCTCCCTCCGCATCGCCGCCCGGTCCCTCGCCGACGCGCGCGAGATCTCCAGGTGCGTCCGCCTCTTCCGCCTCCACCCCCAATTCTTCACCGTCGCCGCGCTCAACGCCGTCGTCCGCGAGCTCTGCCTCAGAAAACACGTTGAAATCGCCCGCGCCGTCGTCTCCAAGCTCCGGGCCTCGATCCCCGCTAACGAGCAAACGTGCAGGCTCCTCGTTGTTGGGCTCTGCCGCACTGGGGACTTGATCGAGGCGGCTAGGGTTTGGAACTTTATGCTGGAAAAGGGGATGGAGCCTGAGATGGATGCCTACGAAGAAATCATCGTTACGATGTTCAAAACGAATAGATTCGGCGAGGCCGTGCGTCTGTTTTCGTCGATGCGGGAGAGGCGATTCGCCGATCTGCGGATCAGTTCGTATCGAATTGTGGTCGAATGGAGCAGTAAAATCGGGAGGCTTTCTTGCGTCCACATGGTGTTCGCGGAAATGCTCAAGAGAGGGATCGGTTCGGACGCTGCCACCGTCGGGCATTTGATCTACGGCCTCCTGGCGAGGAGGAGAGTGGACGAAGCCTACAGAGTTTTCAGAGGGGCGGAAGCTGTGGATCTGAGCTTGTGCCATGGCATGATGAAAGGGCTGCTAAGGATGAAGAGGGCGGCCATAGCGACTGATGTTTTGAGGGAGATGGTGAGAAGGGGGGTGGAGCCCAACATGCACACGTACATCATGCTGCTCCAGGGTCACATGGGGAAGAAGGGGAAGAAGGGGAGGAAGGATCAAAGGGTGAACTTTGATAGTGTTTTCGTCGGGGGATTGGTGAAGGCGGGGAAGACGCTTGAGGCGAGCAAGTTCGCGGAGCGGGCGATGGGGAGCGCGGCGGAGGTGCCGAGATTCGACTACAACAAGTTCTTGCATCTCTTCTCCAATGAAGATGGGGTGGAGATGTTCGAGGAAGTGGGGAGGAGGCTGAAGGAGGCGGGGATGCCTGATCTCGGAGATGTTATGCTTGTGTATGGGGAGAGAATGGCTACGAGGGAGAGGAGGCGGCGAGCGATGCGGGAGGCACAACAGATCTATAATGAGGATAATGCTATCCTAAAACATTTAGAATTTTAATTAAAATCATATATTTTTTATTATTAAGCATTCCGGTCAGGTTTAGAGTTCTCTTGCTGGAGCCCCTATGGGATCGCCGCCGGCGTTCTCTCCCAACCATCTGGCTTATTGGGCCGTACACCCTCTCCTCAACGTCAAGGCTTCGCTTTCGTTTTGAAAACTATGGAGGAGTCACTTTGAAGGGGAATGAGGGCATGGCCGCACTGATATTGAGGGGACCCAGCCAACTGAGGCGGTTTGGAAAAATAATTTTGTTATAATGGAAAAACTATGGCTTTCTTGGGAGGTATGCTTACAAAGAAATGTCAAAATAGTGCTTTCTGAAGGCGTTGAGATTGTGCCCGCATGTGAAAATGAAGGTTGCCGATGCTATGATGCACCTCTTCGTTGAAGACGCATTGTAAGAGAGCTAATTCCATGGTCGAAAGAACAGGTGTTGGAGGCCGACGTTGGCGGCTGATGTTGAAGCCTACGACGGCGCCGGTCAAGAGCTCTATCTTCTTCTCCCCTCCAACGAAGGGCATTTGAGGCCGTTGTTGCCGCCTCCATCTGCTTCAACTTCAGTGCAAAGAAACGGTGGGCGTTAGATGAGGGCAGCTAATCTATATCTTGTTTAGGCTTTTAGAAATACAGAGAATAAAAATAAATATTTTGGAGAAATTCTTGATTAAATTAAGGGTATGAATGATTTTACGGTGACTAGTATATGGAATATTATAATAATGGGAAATGTTTCAATACTTC

Network for GWHGAAEX005555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	80	105	0.011
PF13041.5	PPR_2	218	257	5.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.210
SRP064423	SRR2545915	Juvenile tuber	1.870
SRP108465	SRR5643513	five period of Gastrodia elata	2.230
	SRR5643514	five period of Gastrodia elata	2.840
	SRR5643515	five period of Gastrodia elata	2.680
	SRR5643524	five period of Gastrodia elata	2.440
	SRR5643525	five period of Gastrodia elata	2.710
	SRR5643528	five period of Gastrodia elata	2.400
	SRR5643658	five period of Gastrodia elata	2.490
	SRR5643659	five period of Gastrodia elata	4.210
	SRR5643660	five period of Gastrodia elata	4.160
	SRR5643661	five period of Gastrodia elata	6.480
	SRR5643662	five period of Gastrodia elata	5.850
	SRR5643663	five period of Gastrodia elata	4.620
	SRR5643664	five period of Gastrodia elata	6.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.270
SRP279888	Gastro	Gastrodia elata tuber	6.96
	Juven	Juvenile tuber	3.99
	Mother_Gastro	Mother tuber of Gastrodia elata	3.36
	Mother_Juven	Mother tuber of Juvenile	1.66