Detail information of GWHGAAEX005557/evm.TU.scaffold_166.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18551.00E-69Predicted RNA-binding protein
nrgi|672132902|ref|XP_008790044.1|7.12E-93PREDICTED: la-related protein 6A [Phoenix dactylifera]
Swissprottr|Q94A38|LRP6A_ARATH4.00E-70La-related protein 6A
trEMBLtr|M0RZP2|M0RZP2_MUSAM8.00E-87Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P13840_001}
TAIRAT5G462501.00E-69RNA-binding protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000171816916836242-
Transcript Sequence

Network for GWHGAAEX005557

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05383.16La851424.80E-26
PF00076.21RRM_11752483.30E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding
GO:1990904Cellular Componentribonucleoprotein complex
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms245.630
SRR2545915Juvenile tuber158.900
SRP108465SRR5643513five period of Gastrodia elata174.830
SRR5643514five period of Gastrodia elata163.690
SRR5643515five period of Gastrodia elata158.840
SRR5643524five period of Gastrodia elata159.540
SRR5643525five period of Gastrodia elata138.350
SRR5643528five period of Gastrodia elata119.750
SRR5643658five period of Gastrodia elata129.280
SRR5643659five period of Gastrodia elata151.220
SRR5643660five period of Gastrodia elata160.850
SRR5643661five period of Gastrodia elata171.310
SRR5643662five period of Gastrodia elata229.670
SRR5643663five period of Gastrodia elata172.120
SRR5643664five period of Gastrodia elata221.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1145.420
SRR6049655Rhizomagastrodiae_C368-T10_good_1173.360
SRR6049656Rhizomagastrodiae_C368-T07_good_1172.480
SRR6049657Rhizomagastrodiae_C368-T07_good_1142.330
SRR6049658Rhizomagastrodiae_C368-T04_good_1137.160
SRR6049659Rhizomagastrodiae_C368-T04_good_1124.700
SRR6049660Rhizomagastrodiae_C368-T01_good_1146.910
SRR6049661Rhizomagastrodiae_C368-T04_good_1134.650
SRR6049662Rhizomagastrodiae_C368-T01_good_1166.620
SRR6049663Rhizomagastrodiae_C368-T01_good_1171.130
SRR6049664Rhizomagastrodiae_C368-T10_good_1222.350
SRR6049665Rhizomagastrodiae_C368-T10_good_1222.350
SRP279888GastroGastrodia elata tuber 263.05
JuvenJuvenile tuber233.39
Mother_GastroMother tuber of Gastrodia elata 125.26
Mother_JuvenMother tuber of Juvenile 176.25