Detail information of GWHGAAEX005558/evm.TU.scaffold_166.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-177 | FOG: PPR repeat |
| nr | gi|672120934|ref|XP_008783751.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like [Phoenix dactylifera] |
| Swissprot | tr|Q0WN01|PP286_ARATH | 1.00E-178 | Pentatricopeptide repeat-containing protein At3g58590 |
| trEMBL | tr|V4U7B0|V4U7B0_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR59995.1} |
| TAIR | AT3G58590 | 3.00E-177 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000171 | 1027392 | 1039965 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005558
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 112 | 151 | 4.20E-09 |
| PF01535.19 | PPR | 188 | 212 | 0.00016 |
| PF13041.5 | PPR_2 | 314 | 362 | 3.20E-07 |
| PF13041.5 | PPR_2 | 415 | 461 | 2.20E-09 |
| PF01535.19 | PPR | 547 | 576 | 0.0002 |
| PF01535.19 | PPR | 620 | 646 | 0.00057 |
| PF01535.19 | PPR | 648 | 678 | 6.20E-07 |
| PF01535.19 | PPR | 687 | 708 | 0.15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.650 |
| SRR2545915 | Juvenile tuber | 0.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.870 |
| SRR5643514 | five period of Gastrodia elata | 0.670 | |
| SRR5643515 | five period of Gastrodia elata | 0.650 | |
| SRR5643524 | five period of Gastrodia elata | 0.780 | |
| SRR5643525 | five period of Gastrodia elata | 0.090 | |
| SRR5643528 | five period of Gastrodia elata | 0.150 | |
| SRR5643658 | five period of Gastrodia elata | 0.070 | |
| SRR5643659 | five period of Gastrodia elata | 0.620 | |
| SRR5643660 | five period of Gastrodia elata | 0.700 | |
| SRR5643661 | five period of Gastrodia elata | 0.680 | |
| SRR5643662 | five period of Gastrodia elata | 0.720 | |
| SRR5643663 | five period of Gastrodia elata | 0.820 | |
| SRR5643664 | five period of Gastrodia elata | 0.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.16 |
| Juven | Juvenile tuber | 0.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.12 | |
| Mother_Juven | Mother tuber of Juvenile | 0.15 |