Detail information of GWHGAAEX005567/evm.TU.scaffold_166.39


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672107461|ref|XP_008812198.1|1.19E-118PREDICTED: uncharacterized protein LOC103723068 isoform X2 [Phoenix dactylifera]
trEMBLtr|K4ADG8|K4ADG8_SETIT1.00E-118Uncharacterized protein {ECO:0000313|EnsemblPlants:Si036925m}
TAIRAT4G177202.00E-82RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017116470671684178+
Transcript Sequence

Network for GWHGAAEX005567

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_18711.20E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.470
SRR2545915Juvenile tuber10.090
SRP108465SRR5643513five period of Gastrodia elata13.540
SRR5643514five period of Gastrodia elata12.330
SRR5643515five period of Gastrodia elata17.980
SRR5643524five period of Gastrodia elata14.270
SRR5643525five period of Gastrodia elata36.450
SRR5643528five period of Gastrodia elata33.440
SRR5643658five period of Gastrodia elata37.200
SRR5643659five period of Gastrodia elata5.200
SRR5643660five period of Gastrodia elata5.180
SRR5643661five period of Gastrodia elata6.940
SRR5643662five period of Gastrodia elata8.110
SRR5643663five period of Gastrodia elata7.130
SRR5643664five period of Gastrodia elata8.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.060
SRR6049655Rhizomagastrodiae_C368-T10_good_16.110
SRR6049656Rhizomagastrodiae_C368-T07_good_19.040
SRR6049657Rhizomagastrodiae_C368-T07_good_14.970
SRR6049658Rhizomagastrodiae_C368-T04_good_16.200
SRR6049659Rhizomagastrodiae_C368-T04_good_15.260
SRR6049660Rhizomagastrodiae_C368-T01_good_16.010
SRR6049661Rhizomagastrodiae_C368-T04_good_19.010
SRR6049662Rhizomagastrodiae_C368-T01_good_110.430
SRR6049663Rhizomagastrodiae_C368-T01_good_18.720
SRR6049664Rhizomagastrodiae_C368-T10_good_113.390
SRR6049665Rhizomagastrodiae_C368-T10_good_113.390
SRP279888GastroGastrodia elata tuber 7.10
JuvenJuvenile tuber3.31
Mother_GastroMother tuber of Gastrodia elata 33.54
Mother_JuvenMother tuber of Juvenile 25.44