Detail information of GWHGAAEX005575/evm.TU.scaffold_167.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-37 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672137170|ref|XP_008792302.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 [Phoenix dactylifera] |
| Swissprot | tr|C0LGG8|Y5343_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At1g53430 (Precursor) |
| trEMBL | tr|M0TA89|M0TA89_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P25940_001} |
| TAIR | AT1G53430 | 0 | Leucine-rich repeat transmembrane protein kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000164 | 152742 | 187331 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005575
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11721.7 | Malectin | 408 | 589 | 1.90E-39 |
| PF07714.16 | Pkinase_Tyr | 668 | 937 | 2.90E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_DLSV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.780 |
| SRR2545915 | Juvenile tuber | 94.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.970 |
| SRR5643514 | five period of Gastrodia elata | 29.010 | |
| SRR5643515 | five period of Gastrodia elata | 40.150 | |
| SRR5643524 | five period of Gastrodia elata | 32.270 | |
| SRR5643525 | five period of Gastrodia elata | 26.360 | |
| SRR5643528 | five period of Gastrodia elata | 16.070 | |
| SRR5643658 | five period of Gastrodia elata | 12.490 | |
| SRR5643659 | five period of Gastrodia elata | 53.580 | |
| SRR5643660 | five period of Gastrodia elata | 49.070 | |
| SRR5643661 | five period of Gastrodia elata | 60.600 | |
| SRR5643662 | five period of Gastrodia elata | 42.100 | |
| SRR5643663 | five period of Gastrodia elata | 47.020 | |
| SRR5643664 | five period of Gastrodia elata | 34.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 45.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.28 |
| Juven | Juvenile tuber | 30.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.23 | |
| Mother_Juven | Mother tuber of Juvenile | 26.10 |