Gene detail

Detail information of GWHGAAEX005584/evm.TU.scaffold_167.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|296138792\|ref\|YP_003646035.1\|	3.00E-52	nucleotidyl transferase [Tsukamurella paurometabola DSM 20162]
KOG	KOG1322	0	GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase
nr	gi\|573924519\|ref\|XP_006649823.1\|	0	PREDICTED: probable mannose-1-phosphate guanylyltransferase 1-like [Oryza brachyantha]
Swissprot	tr\|Q84JH5\|GMPP1_ORYSJ	0	Probable mannose-1-phosphate guanylyltransferase 1
trEMBL	tr\|J3LMD1\|J3LMD1_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB03G22070.1}
trEMBL	tr\|J3LMD1\|J3LMD1_ORYBR	6.00E-16	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB03G22070.1}
TAIR	AT2G39770	0	Glucose-1-phosphate adenylyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000164	1362135	1377299	-

Transcript Sequence
>GWHTAAEX005584 ATGTTAGAACAGTCAAAAGTAGGCCTCCAGTTATTTTGGGTGTGTGGTTGCTACTCCAAAGAGGAGACAAGAGCTCCTAAGGTGACGCTGAATTTCCTCGAGGAATTTGAAGCAAAGCTTGGGATCACAATCATGTGCCCTCAGGAAATTGAGCCGCTTGGAACATTCGACCCTCTTGTGCTTGAAAGAGAGAAGTTGGTGGATGGCTCTGGTGAACCATTCTTTGTGCAGAGCAGTGATGTTATACGTGGCTTATTTGATAAGGTCTTAACCTGTCTGAATTGCCACAATTTAAAGATCCGTGCTTGTGATTCCTCGGTGATTGAAGACGAGAGAAAATATAAGGCAGGATCTTCCAAAATGAAGGCGCTAATTCTTGTTGGTGGATTTGGCACCCGTTTGCGACCATTGACTCTCAGCATTCCAAAACCCATAGTGGATTTCGCCAACAAACCAATGATCCTACATCAGATTGAAGCTCTCAAAGAGGTGGGCGTAACTGAAGTTGTTCTAGCCATAAATTATCAGCCGGAGGTGATGCTAAATTTCCTCAAGGAATTTGAAGCAAAGCTTGGGATCACAATCACGTGCTCTCAGGAAACAGAACCGCTTGGAACAGCCGGCCCTCTCGCGCTTGCGAGAGAGAAGCTGGTGGACGGTTCCGGCGATCCATTCTTTGTGCTAAACAGTGATGTTATAAGCGAGTACCCGTTCGCTGATCTGATAAAGTACCACAAGTCCCACGAAGGGGAGGCGACAATCCTGGTGACTAAGGTGGATGAGCCATCGAAATACGGAGTGGTTGTGATGGAGGAGGAGAGCGGAAGGGTGGAGAGATTTGTGGAGAAGCCGAAGGTATTCGTGGGGAACAAGATAAACGCGGGAATCTACCTGCTGAACCTGTCAGTGCTGGAGAGGATCGAGCTGAGGCCGACGTCGATAGAGAAGGAGGTGTTTCCGAAGATAGCAGAAGAGCGGAGGCTGTTCGCCATGGTGTTGGGGGGGTTCTGGATGGACATTGGGCAGCCGAGGGACTACGTCACAGGGCTGAGGCTGTACCTGGGCTCCCTCAGGAGGAGAGGCTGGGGTGGGCTGGCGTCGGGCCCGCAGTTCATCGGGAACGTGCTAGTGCACGAGAGCGCGGTGATTGGGCCGGGCTGCTTGATCGGGCCAGATGTGGCGATCGGGCCGGGGTGCGTGGTGGAGAGCGGGGTGCGGCTGTCGAGGTGCACGGTGATGCGGGGGGCGCGCGTGAGAAACCACTCGTGCGTTTCGGGGAGCATCATCGGGTGGCACTCCACGGTGGGGCAGTGGGCCAGGGTTGAGAACATGACCATTCTTGGAGAGGACGTCCACGTTAGGGATGAGGTCTACAGCAATGGAGGCATCATTCTACCGCACAAGGAGATCAAGTCCAGCATCCTCAAGCCTGAGATCGTCAT

Network for GWHGAAEX005584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.22	NTP_transferase	122	348	8.00E-50
PF00132.23	Hexapep	380	415	2.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00966	GMPP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0016779	Molecular Function	nucleotidyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.090
SRP064423	SRR2545915	Juvenile tuber	24.260
SRP108465	SRR5643513	five period of Gastrodia elata	124.640
	SRR5643514	five period of Gastrodia elata	175.300
	SRR5643515	five period of Gastrodia elata	138.660
	SRR5643524	five period of Gastrodia elata	167.390
	SRR5643525	five period of Gastrodia elata	89.330
	SRR5643528	five period of Gastrodia elata	61.780
	SRR5643658	five period of Gastrodia elata	127.070
	SRR5643659	five period of Gastrodia elata	106.460
	SRR5643660	five period of Gastrodia elata	80.880
	SRR5643661	five period of Gastrodia elata	82.610
	SRR5643662	five period of Gastrodia elata	57.750
	SRR5643663	five period of Gastrodia elata	67.500
	SRR5643664	five period of Gastrodia elata	62.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	89.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	121.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	73.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	88.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	140.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	140.880
SRP279888	Gastro	Gastrodia elata tuber	38.37
	Juven	Juvenile tuber	43.67
	Mother_Gastro	Mother tuber of Gastrodia elata	57.07
	Mother_Juven	Mother tuber of Juvenile	29.60