Detail information of GWHGAAEX005588/evm.TU.scaffold_167.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159039901|ref|YP_001539154.1| | 3.00E-31 | regulator of chromosome condensation, RCC1 [Salinispora arenicola CNS-205] |
| KOG | KOG1426 | 0 | FOG: RCC1 domain |
| nr | gi|743818402|ref|XP_010931215.1| | 0 | PREDICTED: ultraviolet-B receptor UVR8-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 1.00E-38 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|M0T2M2|M0T2M2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P28980_001} |
| TAIR | AT3G55580 | 0 | Regulator of chromosome condensation (RCC1) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000164 | 1615258 | 1628073 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005588
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13540.5 | RCC1_2 | 236 | 265 | 1.20E-07 |
| PF00415.17 | RCC1 | 332 | 381 | 1.50E-10 |
| PF00415.17 | RCC1 | 384 | 434 | 1.30E-10 |
| PF00415.17 | RCC1 | 438 | 486 | 1.50E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.030 |
| SRR2545915 | Juvenile tuber | 11.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.400 |
| SRR5643514 | five period of Gastrodia elata | 6.160 | |
| SRR5643515 | five period of Gastrodia elata | 4.470 | |
| SRR5643524 | five period of Gastrodia elata | 5.510 | |
| SRR5643525 | five period of Gastrodia elata | 51.160 | |
| SRR5643528 | five period of Gastrodia elata | 33.260 | |
| SRR5643658 | five period of Gastrodia elata | 16.400 | |
| SRR5643659 | five period of Gastrodia elata | 4.430 | |
| SRR5643660 | five period of Gastrodia elata | 5.940 | |
| SRR5643661 | five period of Gastrodia elata | 8.530 | |
| SRR5643662 | five period of Gastrodia elata | 7.840 | |
| SRR5643663 | five period of Gastrodia elata | 8.240 | |
| SRR5643664 | five period of Gastrodia elata | 6.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.02 |
| Juven | Juvenile tuber | 9.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.75 | |
| Mother_Juven | Mother tuber of Juvenile | 13.90 |