Detail information of GWHGAAEX005592/evm.TU.scaffold_167.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296133478|ref|YP_003640725.1| | 6.00E-24 | serine/threonine protein kinase [Thermincola potens JR] |
| nr | gi|743888732|ref|XP_010910689.1| | 0 | PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Elaeis guineensis] |
| Swissprot | tr|Q9M2S4|LRKS4_ARATH | 0 | L-type lectin-domain containing receptor kinase S.4 (Precursor) |
| trEMBL | tr|W9RQN5|W9RQN5_9ROSA | 0 | L-type lectin-domain containing receptor kinase S.4 {ECO:0000313|EMBL:EXB65273.1} |
| TAIR | AT3G55550 | 0 | Concanavalin A-like lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000164 | 2264547 | 2266613 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005592
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module14 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00139.18 | Lectin_legB | 36 | 280 | 7.40E-76 |
| PF00069.24 | Pkinase | 349 | 556 | 1.80E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_L-LEC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.050 |
| SRR2545915 | Juvenile tuber | 19.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.900 |
| SRR5643514 | five period of Gastrodia elata | 30.700 | |
| SRR5643515 | five period of Gastrodia elata | 54.470 | |
| SRR5643524 | five period of Gastrodia elata | 41.840 | |
| SRR5643525 | five period of Gastrodia elata | 37.630 | |
| SRR5643528 | five period of Gastrodia elata | 69.170 | |
| SRR5643658 | five period of Gastrodia elata | 27.920 | |
| SRR5643659 | five period of Gastrodia elata | 51.170 | |
| SRR5643660 | five period of Gastrodia elata | 41.380 | |
| SRR5643661 | five period of Gastrodia elata | 112.830 | |
| SRR5643662 | five period of Gastrodia elata | 71.470 | |
| SRR5643663 | five period of Gastrodia elata | 47.390 | |
| SRR5643664 | five period of Gastrodia elata | 43.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.63 |
| Juven | Juvenile tuber | 10.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 171.01 | |
| Mother_Juven | Mother tuber of Juvenile | 43.65 |