Detail information of GWHGAAEX005599/evm.TU.scaffold_168.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1104 | 0 | Nuclear cap-binding complex, subunit NCBP1/CBP80 |
| nr | gi|672181162|ref|XP_008810788.1| | 0 | PREDICTED: nuclear cap-binding protein subunit 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q10LJ0|NCBP1_ORYSJ | 0 | Nuclear cap-binding protein subunit 1 |
| trEMBL | tr|A0A097PNN3|A0A097PNN3_9ASPA | 0 | ABH1 {ECO:0000313|EMBL:AIU49630.1} (Fragment) |
| TAIR | AT2G13540 | 0 | ARM repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 162002 | 246439 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005599
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02854.18 | MIF4G | 128 | 325 | 3.70E-25 |
| PF09088.10 | MIF4G_like | 448 | 571 | 2.00E-34 |
| PF09090.10 | MIF4G_like_2 | 599 | 853 | 2.00E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12882 | NCBP1, CBP80 | Spliceosome | map03040 |
| RNA transport | map03013 | ||
| mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016070 | Biological Process | RNA metabolic process |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.490 |
| SRR2545915 | Juvenile tuber | 37.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.310 |
| SRR5643514 | five period of Gastrodia elata | 41.500 | |
| SRR5643515 | five period of Gastrodia elata | 35.850 | |
| SRR5643524 | five period of Gastrodia elata | 40.840 | |
| SRR5643525 | five period of Gastrodia elata | 14.810 | |
| SRR5643528 | five period of Gastrodia elata | 12.060 | |
| SRR5643658 | five period of Gastrodia elata | 12.280 | |
| SRR5643659 | five period of Gastrodia elata | 28.150 | |
| SRR5643660 | five period of Gastrodia elata | 32.270 | |
| SRR5643661 | five period of Gastrodia elata | 28.510 | |
| SRR5643662 | five period of Gastrodia elata | 27.850 | |
| SRR5643663 | five period of Gastrodia elata | 27.260 | |
| SRR5643664 | five period of Gastrodia elata | 30.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.53 |
| Juven | Juvenile tuber | 55.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.86 | |
| Mother_Juven | Mother tuber of Juvenile | 51.81 |