Gene detail

Detail information of GWHGAAEX005600/evm.TU.scaffold_168.7

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0167	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|672185356\|ref\|XP_008812798.1\|	PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Phoenix dactylifera]
Swissprot	tr\|B9DHT4\|ARIA_ARATH	ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBL	tr\|Q688N3\|Q688N3_ORYSJ	Putative uncharacterized protein P0605G01.6 {ECO:0000313\|EMBL:AAU10798.1}
TAIR	AT5G13060	ARMADILLO BTB protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000173	258924	297713	+

Transcript Sequence
>GWHTAAEX005600 TGGAAAAGCTAAAAGAGAGGGCGGGTAGGTTTAGAAATTAGAAGATGCACTTGTTCGCGGTCTAATTATAAAATATTACTGAGAGGCGCAGCGACTGCCTTAGCCCTGGTAACGCTCCTTTCTCCCATGGAGGAGCAACAGCGCCCACAGCTGCCCGGCATGGTCCAACAACGGAAGGGCCAGAAGAGAAAACTAGAGGACGTATCTACTCCATCAGTCGCGGCTGAAGAGGATGAGGCGGTCGATGACGGAGTTTCCGTCGAGATCTGCTGCCAGACATCTTTAGAAACCCTAGCCCACCAAGTGAGGGTCCAAGTCGAGATCTTAGAGAAAGGCTTTTCATGGCGAAGAATCGATCGCGAAGCCGCCAAAAACGCAACTCACACCCTCGCCGACCTTGCGAAGAACGAGGAGCTGGTGAATCTGATAGTAGAGAATGGTGCTGTTCCTGCACTTGTTCGTCATCTGCAGGAGCCGACTACTCTGCTTATGGATGGCGATGGAGGGGGAGAGCGTCACTATGAGCATGACGTGGAGAAAGGGAGTGCATTTGCTTTGGGCCTATTGGCCGTTAAGCCTGAGCACCAGCAACTTATTGTTGATGCTGGTGCCTTACCTCTTCTTGTGTGTCTCCTGGGAAGGCATAAGAAGGGCAACTACATACGGGCTGTTAGTAGCCTTATAAGGAGGGCTGCTGACGCTATCACTAATCTTGCTCATGAAAATAGTATCATTAAAACATTTGTCAGAATTGAAGGCGGTATTCCACCTCTAGTTGAATTGCTAGATTCGACAGATCCAAAGGTTCAACGAGCAGCTGCTGGAGCTTTGCGAACATTGGCTTTCAAAAATGAAGAGAACAAGAACCAAATAGTTGAATGCAATGCTCTCCCAACTCTTATTCTTATGCTTCGGTCGCATGATGCTGCTGTACATTACGAAGCGGTAGGTGTTATTGGGAATCTAGTTCATTCATCTCCAAACATTAAAAAAGATGTTCTTGCTGCTGGTGCTCTACAACCTGTTATTGACTTGCTAAGCTCCTGCTGCACAGAGAGCCAAAGAGAAGCTGCTCTTTTACTTGGGCAGTTTGCTGCAACAGACTCAGACTCCAAGGTTCACATTGTGCAGCGCGGGGCAGTCCGCCCTCTCATTAGCATGCTTCAGTCAAATGATGTACAACTTAAAGAGATGTCTGCTTTTGCACTTGGGAGATTAGCTCAGGATTCACATAATCAAGCTGGTATTGCTTATGAAGGTGGTCTTCTTCCTTTACTAAAACTTCTTGATTCAAAAAATGGCTCTCTTCAACATAATGCAGCGTTTGCACTGTATGGAATTGCGGATAATGAGGACAATGTCTGTAGTTTTATGAGTATTGGTGGTGTCCAAAAGTTGCAAGAGGGTGAATTCATTGTGCAGGCAACGAAAGATTGTGTGGCCAAAACAGTGAAAAGATTGGAGGAGAAGATCCATGGTCGAGTGCTGAAGCATTTGCTTTATGTGATGAGAATTGAAGAGAAGCTCATTCAAAGACGCATAGGATTGTCTTTGGCTCACCTTTGTTCCCCTGAGGACCAACGGACTATTTTCATTGACAACAATGGACTTGATGTGCTTCTTGGTTTGCTTGGTTCCTCAAATTCAAAACAACAAGAAGATGGTTTTGCAGCACTTTTCAAGTTAGCTAACAAAGCCATGGCTCTTTCACCAATGGATGCAGCTCCTCCTTCTCCAACACCCCAGGTATACCTGGGTGAACGTTTTGTCAACAGTTCTACGATATCAGATGTTACTTTTCTGGTTGAAGGAAAGCGCTTTTATGCACACAGAATCGCCTTGCTTGCTTCCTCCGATGCTTTTCGAGCAATGTTTGATGGTGGGTACCGGGAGAAGGATACAAGAGACATCGAGATTCCAAACATTAAATGGGAGGTATTTGAATTGATGATGAGATTCATTTACACTGGGTCTGTCGAAATATCTCCTGATATTGCTCAAGAGCTTCTTCGGGCGGCTGATCAGTATCTGCTCGAAGGTTTGAAGCGTTTGTGCGAGTACGCCATCGCACAGAATGTGAACCTTGACAACATCTATTCGATGTACGAGCTGTCAGAGGCTTACAATGCCACGAATTTGAGGCAAACATGTATTCTTTTCATCCTGGAGCACTTTGACAAGACCCGTACAAGGCCTTGGCACTCTGAGCTGATCACACGCGTCATTCCCGAAATGCGGAATTATTTTGACAGAATTCTTCGCCCCAGTCAGAGGAATGCGCATTTGTAGAAACTCGGTGATTGACGGCATTTGTAATGCAGTGATGGTGTTTTTTCTGGGGCTATTGCTTCACATATATATGTCCAGGCGGTCAAGTAAAAGCCAATGCTTTGATTTTTTAGCCGGTTTGGGATGCATCATGTCTTTGGCTGTTTACCAGCCAATTAGCTCATCTTTCTGTAAAGTTTGTGTTCTGTTCTAAGATTTTCCTTGCTTTGTGCTCTACCACATTAATATGGCAAAAAATGAGTTTTTTTTGTTTTGTTTTTTTAGTTTCTAATTTTTTCAAAGCTCACTAGGAGTTGAGGCTGGTGTGAATGCCTGCTCTTCAATTGTATTCTACTCAATAGTTAGTTTAAACTAAATTAGCTTCCAGAAACACTTTCTATGCGGAAAGCTGCATACTAAATCATGGTTCTGTAGCTTTAGTATTTTATATAAAGTTATATAGACAAAATTGCCATGTCTACATTCTTAAATATTGTAAATCATTGCATACACAATGAGTTTTAAGACCATGTACTTTGTGGAGAAGTGAGAGATTGAAAACTTGAGGAATAG

Network for GWHGAAEX005600

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.22	Arm	207	239	5.70E-09
PF00514.22	Arm	242	281	1.90E-06
PF00514.22	Arm	327	365	0.00036
PF00651.30	BTB	549	650	1.10E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.440
SRP064423	SRR2545915	Juvenile tuber	52.360
SRP108465	SRR5643513	five period of Gastrodia elata	39.330
	SRR5643514	five period of Gastrodia elata	35.830
	SRR5643515	five period of Gastrodia elata	38.130
	SRR5643524	five period of Gastrodia elata	38.060
	SRR5643525	five period of Gastrodia elata	42.540
	SRR5643528	five period of Gastrodia elata	35.380
	SRR5643658	five period of Gastrodia elata	43.180
	SRR5643659	five period of Gastrodia elata	43.880
	SRR5643660	five period of Gastrodia elata	40.620
	SRR5643661	five period of Gastrodia elata	42.350
	SRR5643662	five period of Gastrodia elata	39.420
	SRR5643663	five period of Gastrodia elata	41.620
	SRR5643664	five period of Gastrodia elata	37.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.960
SRP279888	Gastro	Gastrodia elata tuber	37.39
	Juven	Juvenile tuber	41.62
	Mother_Gastro	Mother tuber of Gastrodia elata	26.20
	Mother_Juven	Mother tuber of Juvenile	26.19