Detail information of GWHGAAEX005603/evm.TU.scaffold_168.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16747.00E-52Cyclin
nrgi|743846272|ref|XP_010938791.1|5.32E-87PREDICTED: cyclin-P3-1-like isoform X2 [Elaeis guineensis]
Swissprottr|Q75HV0|CCP31_ORYSJ4.00E-69Cyclin-P3-1
trEMBLtr|M0UB25|M0UB25_MUSAM2.00E-81Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP21170_001}
TAIRAT3G631207.00E-52cyclin p1;1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000173323924325267-
Transcript Sequence

Network for GWHGAAEX005603

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08613.10Cyclin571671.70E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0000079Biological Processregulation of cyclin-dependent protein serine/threonine kinase activity
GO:0019901Molecular Functionprotein kinase binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.310
SRR2545915Juvenile tuber69.800
SRP108465SRR5643513five period of Gastrodia elata66.380
SRR5643514five period of Gastrodia elata43.060
SRR5643515five period of Gastrodia elata88.540
SRR5643524five period of Gastrodia elata54.970
SRR5643525five period of Gastrodia elata92.890
SRR5643528five period of Gastrodia elata80.820
SRR5643658five period of Gastrodia elata76.390
SRR5643659five period of Gastrodia elata93.400
SRR5643660five period of Gastrodia elata102.950
SRR5643661five period of Gastrodia elata93.710
SRR5643662five period of Gastrodia elata92.320
SRR5643663five period of Gastrodia elata89.000
SRR5643664five period of Gastrodia elata66.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.930
SRR6049655Rhizomagastrodiae_C368-T10_good_143.560
SRR6049656Rhizomagastrodiae_C368-T07_good_162.230
SRR6049657Rhizomagastrodiae_C368-T07_good_137.230
SRR6049658Rhizomagastrodiae_C368-T04_good_134.850
SRR6049659Rhizomagastrodiae_C368-T04_good_125.150
SRR6049660Rhizomagastrodiae_C368-T01_good_156.420
SRR6049661Rhizomagastrodiae_C368-T04_good_140.890
SRR6049662Rhizomagastrodiae_C368-T01_good_169.650
SRR6049663Rhizomagastrodiae_C368-T01_good_180.230
SRR6049664Rhizomagastrodiae_C368-T10_good_158.690
SRR6049665Rhizomagastrodiae_C368-T10_good_158.690
SRP279888GastroGastrodia elata tuber 56.62
JuvenJuvenile tuber12.87
Mother_GastroMother tuber of Gastrodia elata 15.91
Mother_JuvenMother tuber of Juvenile 6.46