Detail information of GWHGAAEX005605/evm.TU.scaffold_168.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|48477300|ref|YP_023006.1| | 8.00E-19 | flap endonuclease-1 [Picrophilus torridus DSM 9790] |
| KOG | KOG2520 | 1.00E-137 | 5'-3' exonuclease |
| nr | gi|672146816|ref|XP_008797066.1| | 0 | PREDICTED: DNA repair protein UVH3 [Phoenix dactylifera] |
| Swissprot | tr|Q9ATY5|UVH3_ARATH | 4.00E-138 | DNA repair protein UVH3 |
| trEMBL | tr|C5WTS0|C5WTS0_SORBI | 0 | Putative uncharacterized protein Sb01g043560 {ECO:0000313|EMBL:EER95311.1} |
| TAIR | AT3G28030 | 1.00E-137 | 5'-3' exonuclease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 332623 | 363106 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005605
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00752.16 | XPG_N | 1 | 97 | 6.60E-30 |
| PF00867.17 | XPG_I | 917 | 1000 | 8.70E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10846 | ERCC5, XPG, RAD2 | Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006289 | Biological Process | nucleotide-excision repair |
| GO:0004519 | Molecular Function | endonuclease activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
| GO:0004518 | Molecular Function | nuclease activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.610 |
| SRR2545915 | Juvenile tuber | 24.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.320 |
| SRR5643514 | five period of Gastrodia elata | 16.270 | |
| SRR5643515 | five period of Gastrodia elata | 14.220 | |
| SRR5643524 | five period of Gastrodia elata | 14.940 | |
| SRR5643525 | five period of Gastrodia elata | 14.410 | |
| SRR5643528 | five period of Gastrodia elata | 10.560 | |
| SRR5643658 | five period of Gastrodia elata | 12.430 | |
| SRR5643659 | five period of Gastrodia elata | 14.630 | |
| SRR5643660 | five period of Gastrodia elata | 16.990 | |
| SRR5643661 | five period of Gastrodia elata | 13.770 | |
| SRR5643662 | five period of Gastrodia elata | 12.140 | |
| SRR5643663 | five period of Gastrodia elata | 15.160 | |
| SRR5643664 | five period of Gastrodia elata | 16.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.04 |
| Juven | Juvenile tuber | 32.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.75 | |
| Mother_Juven | Mother tuber of Juvenile | 43.70 |