Detail information of GWHGAAEX005606/evm.TU.scaffold_168.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743769191|ref|XP_010914873.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q84MA3|PP345_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g32430, mitochondrial (Precursor) |
| trEMBL | tr|K3ZR04|K3ZR04_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si029034m} |
| TAIR | AT4G32430 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 406399 | 408889 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005606
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 91 | 114 | 0.0002 |
| PF01535.19 | PPR | 189 | 211 | 0.027 |
| PF01535.19 | PPR | 217 | 232 | 0.097 |
| PF01535.19 | PPR | 292 | 319 | 0.01 |
| PF01535.19 | PPR | 388 | 413 | 0.00011 |
| PF01535.19 | PPR | 416 | 439 | 1.60E-05 |
| PF13041.5 | PPR_2 | 517 | 563 | 4.20E-10 |
| PF01535.19 | PPR | 657 | 685 | 0.64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.990 |
| SRR2545915 | Juvenile tuber | 1.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.560 |
| SRR5643514 | five period of Gastrodia elata | 2.120 | |
| SRR5643515 | five period of Gastrodia elata | 2.040 | |
| SRR5643524 | five period of Gastrodia elata | 1.920 | |
| SRR5643525 | five period of Gastrodia elata | 0.970 | |
| SRR5643528 | five period of Gastrodia elata | 0.400 | |
| SRR5643658 | five period of Gastrodia elata | 0.440 | |
| SRR5643659 | five period of Gastrodia elata | 3.640 | |
| SRR5643660 | five period of Gastrodia elata | 4.340 | |
| SRR5643661 | five period of Gastrodia elata | 4.430 | |
| SRR5643662 | five period of Gastrodia elata | 3.840 | |
| SRR5643663 | five period of Gastrodia elata | 3.010 | |
| SRR5643664 | five period of Gastrodia elata | 3.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.31 |
| Juven | Juvenile tuber | 2.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.58 | |
| Mother_Juven | Mother tuber of Juvenile | 0.62 |