Detail information of GWHGAAEX005611/evm.TU.scaffold_168.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|111024117|ref|YP_707089.1|2.00E-61ribulose-phosphate 3-epimerase [Rhodococcus jostii RHA1]
KOGKOG31111.00E-125D-ribulose-5-phosphate 3-epimerase
nrgi|703156927|ref|XP_010111592.1|3.70E-133Ribulose-phosphate 3-epimerase, cytoplasmic isoform [Morus notabilis]
Swissprottr|Q9SE42|RPE1_ORYSJ2.00E-133Ribulose-phosphate 3-epimerase, cytoplasmic isoform
trEMBLtr|W9SGF0|W9SGF0_9ROSA1.00E-133Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}
TAIRAT3G018501.00E-125Aldolase-type TIM barrel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000173547294583953+
Transcript Sequence

Network for GWHGAAEX005611

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00834.18Ribul_P_3_epim52101.00E-64
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01783rpe, RPE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Pentose and glucuronate interconversionsmap00040
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006098Biological Processpentose-phosphate shunt
GO:0016857Molecular Functionracemase and epimerase activity, acting on carbohydrates and derivatives
GO:0004750Molecular Functionribulose-phosphate 3-epimerase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.690
SRR2545915Juvenile tuber102.720
SRP108465SRR5643513five period of Gastrodia elata76.620
SRR5643514five period of Gastrodia elata96.060
SRR5643515five period of Gastrodia elata75.100
SRR5643524five period of Gastrodia elata84.610
SRR5643525five period of Gastrodia elata77.610
SRR5643528five period of Gastrodia elata57.840
SRR5643658five period of Gastrodia elata50.490
SRR5643659five period of Gastrodia elata56.180
SRR5643660five period of Gastrodia elata61.750
SRR5643661five period of Gastrodia elata67.320
SRR5643662five period of Gastrodia elata49.760
SRR5643663five period of Gastrodia elata64.470
SRR5643664five period of Gastrodia elata48.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_185.560
SRR6049655Rhizomagastrodiae_C368-T10_good_164.150
SRR6049656Rhizomagastrodiae_C368-T07_good_185.580
SRR6049657Rhizomagastrodiae_C368-T07_good_176.620
SRR6049658Rhizomagastrodiae_C368-T04_good_162.010
SRR6049659Rhizomagastrodiae_C368-T04_good_162.270
SRR6049660Rhizomagastrodiae_C368-T01_good_166.550
SRR6049661Rhizomagastrodiae_C368-T04_good_165.050
SRR6049662Rhizomagastrodiae_C368-T01_good_186.900
SRR6049663Rhizomagastrodiae_C368-T01_good_175.350
SRR6049664Rhizomagastrodiae_C368-T10_good_1113.950
SRR6049665Rhizomagastrodiae_C368-T10_good_1113.950
SRP279888GastroGastrodia elata tuber 87.21
JuvenJuvenile tuber143.32
Mother_GastroMother tuber of Gastrodia elata 113.33
Mother_JuvenMother tuber of Juvenile 115.55