Detail information of GWHGAAEX005615/evm.TU.scaffold_168.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292493899|ref|YP_003529338.1| | 1.00E-127 | sucrose-phosphate synthase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG0853 | 0 | Glycosyltransferase |
| nr | gi|743806522|ref|XP_010927691.1| | 0 | PREDICTED: probable sucrose-phosphate synthase 2 [Elaeis guineensis] |
| Swissprot | tr|O04933|SPSA2_CRAPL | 0 | Probable sucrose-phosphate synthase 2 |
| trEMBL | tr|M0SPC1|M0SPC1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P16070_001} |
| TAIR | AT1G04920 | 0 | sucrose phosphate synthase 3F |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 758280 | 783608 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005615
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00862.18 | Sucrose_synth | 175 | 440 | 1.50E-11 |
| PF00534.19 | Glycos_transf_1 | 484 | 656 | 1.10E-24 |
| PF05116.12 | S6PP | 825 | 1023 | 3.90E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00696 | E2.4.1.14 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005985 | Biological Process | sucrose metabolic process |
| GO:0046524 | Molecular Function | sucrose-phosphate synthase activity |
| GO:0016157 | Molecular Function | sucrose synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 55.580 |
| SRR2545915 | Juvenile tuber | 44.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 85.220 |
| SRR5643514 | five period of Gastrodia elata | 110.900 | |
| SRR5643515 | five period of Gastrodia elata | 81.320 | |
| SRR5643524 | five period of Gastrodia elata | 90.180 | |
| SRR5643525 | five period of Gastrodia elata | 60.200 | |
| SRR5643528 | five period of Gastrodia elata | 52.560 | |
| SRR5643658 | five period of Gastrodia elata | 70.660 | |
| SRR5643659 | five period of Gastrodia elata | 38.390 | |
| SRR5643660 | five period of Gastrodia elata | 53.030 | |
| SRR5643661 | five period of Gastrodia elata | 36.500 | |
| SRR5643662 | five period of Gastrodia elata | 83.230 | |
| SRR5643663 | five period of Gastrodia elata | 75.100 | |
| SRR5643664 | five period of Gastrodia elata | 98.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 73.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 70.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 69.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 64.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 77.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 85.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 68.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 70.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 72.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 85.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 85.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 103.45 |
| Juven | Juvenile tuber | 120.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 52.34 | |
| Mother_Juven | Mother tuber of Juvenile | 57.10 |