Detail information of GWHGAAEX005617/evm.TU.scaffold_168.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1876 | 5.00E-60 | Actin-related protein Arp2/3 complex, subunit ARPC4 |
| nr | gi|743806508|ref|XP_010927683.1| | 5.52E-93 | PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|F4JUL9|ARPC4_ARATH | 4.00E-87 | Actin-related protein 2/3 complex subunit 4 |
| trEMBL | tr|B6UFY0|B6UFY0_MAIZE | 1.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G112015_P02} |
| TAIR | HS5031595 | 5.00E-60 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 823946 | 873188 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005617
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05856.11 | ARPC4 | 45 | 184 | 3.80E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05755 | ARPC4 | Endocytosis | map04144 |
| Regulation of actin cytoskeleton | map04810 | ||
| Fc gamma R-mediated phagocytosis | map04666 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0034314 | Biological Process | Arp2/3 complex-mediated actin nucleation |
| GO:0030833 | Biological Process | regulation of actin filament polymerization |
| GO:0030041 | Biological Process | actin filament polymerization |
| GO:0005885 | Cellular Component | Arp2/3 protein complex |
| GO:0015629 | Cellular Component | actin cytoskeleton |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.480 |
| SRR2545915 | Juvenile tuber | 15.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.740 |
| SRR5643514 | five period of Gastrodia elata | 7.270 | |
| SRR5643515 | five period of Gastrodia elata | 7.870 | |
| SRR5643524 | five period of Gastrodia elata | 7.280 | |
| SRR5643525 | five period of Gastrodia elata | 4.920 | |
| SRR5643528 | five period of Gastrodia elata | 5.720 | |
| SRR5643658 | five period of Gastrodia elata | 6.050 | |
| SRR5643659 | five period of Gastrodia elata | 8.290 | |
| SRR5643660 | five period of Gastrodia elata | 6.930 | |
| SRR5643661 | five period of Gastrodia elata | 9.580 | |
| SRR5643662 | five period of Gastrodia elata | 7.460 | |
| SRR5643663 | five period of Gastrodia elata | 7.310 | |
| SRR5643664 | five period of Gastrodia elata | 7.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.69 |
| Juven | Juvenile tuber | 9.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.87 | |
| Mother_Juven | Mother tuber of Juvenile | 7.81 |