Detail information of GWHGAAEX005621/evm.TU.scaffold_168.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-52 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743879047|ref|XP_010908331.1| | 0 | PREDICTED: leucine-rich repeat receptor protein kinase EXS [Elaeis guineensis] |
| Swissprot | tr|Q9LYN8|EXS_ARATH | 0 | Leucine-rich repeat receptor protein kinase EXS (Precursor) |
| trEMBL | tr|F6I4A1|F6I4A1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61816.1} |
| TAIR | AT5G07280 | 0 | Leucine-rich repeat transmembrane protein kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 938055 | 946651 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005621
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 34 | 71 | 8.90E-07 |
| PF00560.32 | LRR_1 | 124 | 146 | 0.16 |
| PF00560.32 | LRR_1 | 244 | 262 | 0.73 |
| PF13855.5 | LRR_8 | 552 | 612 | 5.00E-08 |
| PF13855.5 | LRR_8 | 820 | 870 | 1.80E-06 |
| PF00069.24 | Pkinase | 1029 | 1292 | 1.20E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-Xb-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.730 |
| SRR2545915 | Juvenile tuber | 2.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.700 |
| SRR5643514 | five period of Gastrodia elata | 2.990 | |
| SRR5643515 | five period of Gastrodia elata | 1.840 | |
| SRR5643524 | five period of Gastrodia elata | 2.110 | |
| SRR5643525 | five period of Gastrodia elata | 3.880 | |
| SRR5643528 | five period of Gastrodia elata | 2.770 | |
| SRR5643658 | five period of Gastrodia elata | 2.910 | |
| SRR5643659 | five period of Gastrodia elata | 2.250 | |
| SRR5643660 | five period of Gastrodia elata | 2.930 | |
| SRR5643661 | five period of Gastrodia elata | 2.540 | |
| SRR5643662 | five period of Gastrodia elata | 1.610 | |
| SRR5643663 | five period of Gastrodia elata | 2.720 | |
| SRR5643664 | five period of Gastrodia elata | 2.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.11 |
| Juven | Juvenile tuber | 0.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.72 | |
| Mother_Juven | Mother tuber of Juvenile | 0.80 |