Gene detail

Detail information of GWHGAAEX005626/evm.TU.scaffold_168.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|74318170\|ref\|YP_315910.1\|	2.00E-29	peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259]
KOG	KOG0549	6.00E-67	FKBP-type peptidyl-prolyl cis-trans isomerase
nr	gi\|743866810\|ref\|XP_010905155.1\|	4.16E-80	PREDICTED: FK506-binding protein 2-like [Elaeis guineensis]
Swissprot	tr\|Q38936\|FK152_ARATH	2.00E-67	Peptidyl-prolyl cis-trans isomerase FKBP15-2 (Precursor)
trEMBL	tr\|M0TJW5\|M0TJW5_MUSAM	5.00E-79	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU004231}
TAIR	AT5G48580	6.00E-67	FK506- and rapamycin-binding protein 15 kD-2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000173	1045749	1094610	+

Transcript Sequence
>GWHTAAEX005626 ATGCACAGTTATTATGATATAAATGATATCCTGCTCGAGGAAGAGCCTATTTCCGTTGTTTTTCAAGTTGGAGCTAGTGGAGTAGGCCTACTTGATCCCGGTTCACAATCGGACAACGTTGAAAAGGGTGCCAAAGTTGATCTGCCATTATGGCTTGCTCATGAACTGTACTTGAGACAAGCAGTTACCGTCAGCGTTCCTAGTTGTTTTAACTTAGCAACGAGAAAAGAAGTTCAAGCTGATGCATCATGTGTTGATTTGAGGATCCGGTCCCCTTACTTCTATGAACTGGGCTGCAAAATTTTACCTATGGTTGAAGACAAGAGCATCGGTCCCTTTCTCCTTGATACATTCACCAGCAGATACAAGGAAATTCTCAGCAAGGCGCACAGCATCAATGTGGCTCACCCCACTATTTTATCTAAACTAACAAAAGAAGAAACCCTCGGCAGGTCCCATGTAAATCTGTTGTCCATTTGCACGCTCGTGGGACCCACTGCATCAGCTTCTGCCATTGACGCACTCGCTGCCACGATGCGGGTCCCGCAGCCCCGCTATGCTGGCGTGTCACAGCACATCAGAACACAGAAAAAGATAAGCAAGCAATATAGGCTGGGAAAGGATCAATCGATCGCTCTGATTGCGTCGCTGAGCGGAAAGGAAAGGAAAGGGGAAAGCAGAAAGGAAAGGGGAAGCGGCACAGAAGCTGATAGAGGGCAGCAACGTCTTTTTCTTTTTTCTGGTCTTCAAGAAGCAAGAAAGAACAGCGTCAGGCAGATTGATAGTGATCGGAGCTGGCAAAGAGGAGCGCAGATGGGAAAGATTTTAATTAGCTTCGCATTCCTCGCTGCTTTAGTGTTAATTGTTTCTGCGAAGAAATCTCGCGATGTTACGGAATTGCAGATCGGTGTCAAGCACAAACCAGAGACTTGTATCATTCAAGCGCACAAAGGCGATAGAGTTAAAGTGCATTATCATGGGGTACTTACTGATGGAACTGTATTTGACTCAAGTTATGAAAGAGGTGACCCAATTGAATTTGAGGTTGGCAGCGGTCAAGTGATAAAAGGATGGGATCAAGGGCTGCTTGGAATGTGCATTGGTGAGAAGAGGAAGCTGAAGATCCCTGCAAAGCTTGGCTACGGTGCTCAAGGATCTCCTCCGAAGATCCCTGGAGGAGCCACGCTCATCTTCGACACTGAGCTTATGGCTGTCAACGGAAAAACTTCAACCGGCGATCAAAGAGCCAAAGGAGAAGAGGAAGAGCTGTAGGATCGACTGGATAGACATCTGCATTTCTAGGGTTTATGTTGAATACAGACAGCACTGGATGGATGATATCTGAATTTCTTTCAACATTATTATAGGATTTTCAATAATTTTGCGCCTATTTTTCTTCTTGCAATAAGTTGTTTTCTTTTTGGATTTCAATAATAATTCTACTTTGCATTTTAAAATAATTTATGTTTTATTTATGCTGGTTTGCTACATCTGACTTTGTTAAAATCATAAAAGCAGATCACAAAAAACTCTTCAACAGAGGAGGAGAGAAGGGGGAGTTCTTGTAAATT

Network for GWHGAAEX005626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05916.10	Sld5	46	148	1.40E-12
PF00254.27	FKBP_C	314	402	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	65.850
SRP064423	SRR2545915	Juvenile tuber	79.770
SRP108465	SRR5643513	five period of Gastrodia elata	83.800
	SRR5643514	five period of Gastrodia elata	82.490
	SRR5643515	five period of Gastrodia elata	79.230
	SRR5643524	five period of Gastrodia elata	88.610
	SRR5643525	five period of Gastrodia elata	65.310
	SRR5643528	five period of Gastrodia elata	83.250
	SRR5643658	five period of Gastrodia elata	69.590
	SRR5643659	five period of Gastrodia elata	77.590
	SRR5643660	five period of Gastrodia elata	75.960
	SRR5643661	five period of Gastrodia elata	89.280
	SRR5643662	five period of Gastrodia elata	79.180
	SRR5643663	five period of Gastrodia elata	83.000
	SRR5643664	five period of Gastrodia elata	82.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	84.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	79.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	79.440
SRP279888	Gastro	Gastrodia elata tuber	67.00
	Juven	Juvenile tuber	43.61
	Mother_Gastro	Mother tuber of Gastrodia elata	72.50
	Mother_Juven	Mother tuber of Juvenile	57.82