Detail information of GWHGAAEX005627/evm.TU.scaffold_168.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336179971|ref|YP_004585346.1| | 1.00E-34 | peptidyl-prolyl isomerase [Frankia symbiont of Datisca glomerata] |
| KOG | KOG0543 | 0 | FKBP-type peptidyl-prolyl cis-trans isomerase |
| nr | gi|743866812|ref|XP_010905156.1| | 0 | PREDICTED: 70 kDa peptidyl-prolyl isomerase-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q38931|FKB62_ARATH | 0 | Peptidyl-prolyl cis-trans isomerase FKBP62 |
| trEMBL | tr|Q7F1F2|Q7F1F2_ORYSJ | 0 | cDNA clone:J033121G16, full insert sequence {ECO:0000313|EMBL:BAG95934.1} |
| TAIR | AT3G25230 | 0 | rotamase FKBP 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 1095791 | 1101793 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005627
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00254.27 | FKBP_C | 55 | 144 | 3.90E-35 |
| PF00254.27 | FKBP_C | 172 | 261 | 4.80E-16 |
| PF00254.27 | FKBP_C | 286 | 380 | 6.50E-22 |
| PF00515.27 | TPR_1 | 483 | 516 | 6.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09571 | FKBP4_5 | Estrogen signaling pathway | map04915 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003755 | Molecular Function | peptidyl-prolyl cis-trans isomerase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 423.780 |
| SRR2545915 | Juvenile tuber | 676.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 246.120 |
| SRR5643514 | five period of Gastrodia elata | 212.060 | |
| SRR5643515 | five period of Gastrodia elata | 200.240 | |
| SRR5643524 | five period of Gastrodia elata | 197.940 | |
| SRR5643525 | five period of Gastrodia elata | 191.970 | |
| SRR5643528 | five period of Gastrodia elata | 420.420 | |
| SRR5643658 | five period of Gastrodia elata | 133.490 | |
| SRR5643659 | five period of Gastrodia elata | 290.140 | |
| SRR5643660 | five period of Gastrodia elata | 319.440 | |
| SRR5643661 | five period of Gastrodia elata | 275.050 | |
| SRR5643662 | five period of Gastrodia elata | 230.050 | |
| SRR5643663 | five period of Gastrodia elata | 249.350 | |
| SRR5643664 | five period of Gastrodia elata | 275.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 292.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 288.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 310.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 302.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 300.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 299.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 288.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 300.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 331.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 327.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 334.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 334.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 267.41 |
| Juven | Juvenile tuber | 259.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 175.25 | |
| Mother_Juven | Mother tuber of Juvenile | 253.79 |