Detail information of GWHGAAEX005628/evm.TU.scaffold_168.39


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428204750|ref|YP_007100376.1|4.00E-44MIP family channel protein [Chroococcidiopsis thermalis PCC 7203]
KOGKOG02231.00E-100Aquaporin (major intrinsic protein family)
nrgi|743756589|ref|XP_010917707.1|1.00E-120PREDICTED: probable aquaporin TIP4-3 [Elaeis guineensis]
Swissprottr|Q9ATL3|TIP44_MAIZE4.00E-103Aquaporin TIP4-4
trEMBLtr|W1NS41|W1NS41_AMBTC1.00E-118Uncharacterized protein {ECO:0000313|EMBL:ERM98707.1}
TAIRAT2G258101.00E-100tonoplast intrinsic protein 4;1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017311194841129806-
Transcript Sequence

Network for GWHGAAEX005628

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00230.19MIP132321.30E-64
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0015267Molecular Functionchannel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms115.100
SRR2545915Juvenile tuber211.290
SRP108465SRR5643513five period of Gastrodia elata186.780
SRR5643514five period of Gastrodia elata295.420
SRR5643515five period of Gastrodia elata157.680
SRR5643524five period of Gastrodia elata227.430
SRR5643525five period of Gastrodia elata128.280
SRR5643528five period of Gastrodia elata64.370
SRR5643658five period of Gastrodia elata147.840
SRR5643659five period of Gastrodia elata98.540
SRR5643660five period of Gastrodia elata98.210
SRR5643661five period of Gastrodia elata106.220
SRR5643662five period of Gastrodia elata83.830
SRR5643663five period of Gastrodia elata105.450
SRR5643664five period of Gastrodia elata110.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1247.690
SRR6049655Rhizomagastrodiae_C368-T10_good_1178.860
SRR6049656Rhizomagastrodiae_C368-T07_good_1250.120
SRR6049657Rhizomagastrodiae_C368-T07_good_1226.790
SRR6049658Rhizomagastrodiae_C368-T04_good_1200.620
SRR6049659Rhizomagastrodiae_C368-T04_good_1190.900
SRR6049660Rhizomagastrodiae_C368-T01_good_1185.020
SRR6049661Rhizomagastrodiae_C368-T04_good_1208.810
SRR6049662Rhizomagastrodiae_C368-T01_good_1224.100
SRR6049663Rhizomagastrodiae_C368-T01_good_1188.170
SRR6049664Rhizomagastrodiae_C368-T10_good_1274.060
SRR6049665Rhizomagastrodiae_C368-T10_good_1274.060
SRP279888GastroGastrodia elata tuber 112.59
JuvenJuvenile tuber89.59
Mother_GastroMother tuber of Gastrodia elata 102.88
Mother_JuvenMother tuber of Juvenile 78.21