Gene detail

Detail information of GWHGAAEX005632/evm.TU.scaffold_168.49

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743866763\|ref\|XP_010905142.1\|	7.23E-99	PREDICTED: alpha-humulene synthase-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|B1B1U4\|TPSBE_ZINZE	1.00E-89	Beta-eudesmol synthase
trEMBL	tr\|O81634\|O81634_ELAOL	1.00E-98	Sesquiterpene synthase {ECO:0000313\|EMBL:AAC31570.2}
TAIR	AT5G23960	3.00E-64	terpene synthase 21

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000173	1401715	1405225	-

Transcript Sequence
>GWHTAAEX005632 TTCGATTATGGCTTTGGAGGGTGTTGAAATCAAACGACAGTCAGCCGATTATCCCCCTTGTGAGTGGGGAGATTATTTCATAAAACACAATGCTCCTATTTCTACCACAATTCAGAAATCTGAGGAATGGATGAAGGAAAGGGTGAAATAACTTGTGATAGCAGTGAAGGTGCTGCTCAATAATAATAAGAATGAATTAGAACTGTTAGAGTTGATCGATTCTATTCAACGCCTTGGCATTGGCTATCACTTTGAAGGTGTGATTGATGGAAGGCTGAGAGAATTAATGCTTCATTATACGGATTATTATAATCTTGGCAAAAATGAAGAGATTGGTTTGCATGGCGAAGCTCTGAAATTTAGACTATTGAGGCAGCATGGCTATTTTGTTTCATCAGACAACATATTAGATGAAGCACTCGACTTCACAAAGTACCATCTTCTACGAATACAGACAGATTGGGAGCAACAAATTTGCTCAAACTTAATGTTAAAGGAGCTAGTGTCGCATGCCTTGCAATTTCCGCTGTATAGGAGAATCCCAAGGTTGGAAGCAAAGTATTATATAACAATTTATGAGCAAGATAAAGAGCATAGGAATGACATAATTCTAGAGCTTGCAAAATTGGATTTCAATCTTCTTCAATTACTTCACTACGAGGAAGTCAAAAATCTCTCAATATGGTGGGAAGGAATTGAGGCCACCAAAAATTTTAGTTTTTCGCGAGATCGGTTAGTGGAATCATACTTTTGGAGTCTCGCAACGCTGTATGAACCCCAGTACTCAGTAGCAAGAATCATTTTTGCAAAATTAACAACTATATTGACCATCACGGATGATTTAATAGATAATTTTGGAAGTTTAAGTGAGGTCATGCTCCTTATTGACACCATGTTAAGGAGGGGTGCCAAAGCACCAGAACAACTACCAGATTGCATGAAACAATTTTCTAATATCATCGATGATTTTTTACAAGAACTCGAAAGTAAATTAAATGCTTGTGGCTATTTTCATCGAGAATACTACCTCAAGATAATATTTCAAGAATCAGCAAAGGCTTATGTTGCTGAAATAAAATGGAGGGATGAAGAATACACTGCGGGATTAATAGAGCATCTTCAAGTGTCAACACTTTCTTCTTCCAGCACTTTAATGTGTTGTGCAGCCTTTATTGCAATGGGTGATTTAGCTACAAAGGAAGTACTTCAATGGATTGCTGCATTTCCTAAATTTATGTATCATTCATGCGTGATAATGCGAATAAAGGATGACATAGTTTCCAATGAGTTAGAGCAAAAGAGAATCCATGTGGCTTCTACAGTTCAGTGCTACATGAAAGAACATAATTGTGGAATCGATGAAGCTTATGAAGGACTTAAGAAAGTTGTAGAAAATGAATGGAAAAGCTTAAACCATGAGTATCTCATTCTCAATAGTATCATTTCGAAGACTTTATTAGAGAGAGTCATCAACTAAACACGTATCATGGAAATATCATATGATATTATGGATCGATTCACTAATTCAGCAAATTTAAAGGACTACATATCATCTATTTTGACTGTCCCATTTTAATCACTGCTTCGTGTTCTTTTTTAAATCGCATATATTAGTAATATTGTGTGTTTATGAAGTTTGAATAATTATTTGTTAGATTTTCCGTCTTTAAGGTGCGCTAGGCAGATGCCGTACTTCTTTGCATGTGGG

Network for GWHGAAEX005632

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03936.15	Terpene_synth_C	109	373	2.20E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15803	GERD	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016829	Molecular Function	lyase activity
GO:0010333	Molecular Function	terpene synthase activity
GO:0000287	Molecular Function	magnesium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.520
SRP064423	SRR2545915	Juvenile tuber	0.260
SRP108465	SRR5643513	five period of Gastrodia elata	0.750
	SRR5643514	five period of Gastrodia elata	1.300
	SRR5643515	five period of Gastrodia elata	0.480
	SRR5643524	five period of Gastrodia elata	0.660
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.060
	SRR5643664	five period of Gastrodia elata	0.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.700
SRP279888	Gastro	Gastrodia elata tuber	0.03
	Juven	Juvenile tuber	163.92
	Mother_Gastro	Mother tuber of Gastrodia elata	0.40
	Mother_Juven	Mother tuber of Juvenile	13.71