Detail information of GWHGAAEX005634/evm.TU.scaffold_168.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337281471|ref|YP_004620943.1| | 2.00E-13 | glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310] |
| KOG | KOG0144 | 0 | RNA-binding protein CUGBP1/BRUNO (RRM superfamily) |
| nr | gi|743785200|ref|XP_010921849.1| | 0 | PREDICTED: CUGBP Elav-like family member 5 [Elaeis guineensis] |
| Swissprot | tr|O04425|FCA_ARATH | 7.00E-48 | Flowering time control protein FCA |
| trEMBL | tr|D7TP53|D7TP53_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI32276.3} |
| TAIR | AT4G03110 | 0 | RNA-binding protein-defense related 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 1443141 | 1470907 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005634
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 33 | 97 | 7.30E-14 |
| PF00076.21 | RRM_1 | 121 | 187 | 6.30E-17 |
| PF00076.21 | RRM_1 | 361 | 431 | 8.60E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:1990904 | Cellular Component | ribonucleoprotein complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.490 |
| SRR2545915 | Juvenile tuber | 11.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.280 |
| SRR5643514 | five period of Gastrodia elata | 12.610 | |
| SRR5643515 | five period of Gastrodia elata | 15.310 | |
| SRR5643524 | five period of Gastrodia elata | 12.720 | |
| SRR5643525 | five period of Gastrodia elata | 8.510 | |
| SRR5643528 | five period of Gastrodia elata | 13.030 | |
| SRR5643658 | five period of Gastrodia elata | 11.250 | |
| SRR5643659 | five period of Gastrodia elata | 10.750 | |
| SRR5643660 | five period of Gastrodia elata | 10.650 | |
| SRR5643661 | five period of Gastrodia elata | 10.440 | |
| SRR5643662 | five period of Gastrodia elata | 12.110 | |
| SRR5643663 | five period of Gastrodia elata | 8.410 | |
| SRR5643664 | five period of Gastrodia elata | 7.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.84 |
| Juven | Juvenile tuber | 9.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.77 | |
| Mother_Juven | Mother tuber of Juvenile | 21.27 |