Detail information of GWHGAAEX005638/evm.TU.scaffold_168.57


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|212550891|ref|YP_002309208.1|3.00E-09RNA-binding protein RbpA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2]
KOGKOG01302.00E-77RNA-binding protein RBM8/Tsunagi (RRM superfamily)
nrgi|720043881|ref|XP_010269705.1|2.79E-102PREDICTED: RNA-binding protein 8A-B [Nelumbo nucifera]
Swissprottr|Q9FMG4|SC35_ARATH9.00E-09Serine/arginine-rich splicing factor SC35
trEMBLtr|A0A067JH32|A0A067JH32_JATCU4.00E-99Uncharacterized protein {ECO:0000313|EMBL:KDP22118.1}
TAIRAT1G515102.00E-77RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017315709131595754-
Transcript Sequence

Network for GWHGAAEX005638

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11041696.70E-16
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12876RBM8A, Y14 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0006396Biological ProcessRNA processing
GO:0003729Molecular FunctionmRNA binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding
GO:0005737Cellular Componentcytoplasm
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.990
SRR2545915Juvenile tuber42.290
SRP108465SRR5643513five period of Gastrodia elata49.510
SRR5643514five period of Gastrodia elata49.430
SRR5643515five period of Gastrodia elata48.290
SRR5643524five period of Gastrodia elata51.090
SRR5643525five period of Gastrodia elata42.900
SRR5643528five period of Gastrodia elata51.120
SRR5643658five period of Gastrodia elata34.210
SRR5643659five period of Gastrodia elata67.020
SRR5643660five period of Gastrodia elata65.330
SRR5643661five period of Gastrodia elata68.630
SRR5643662five period of Gastrodia elata65.780
SRR5643663five period of Gastrodia elata60.410
SRR5643664five period of Gastrodia elata54.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_156.750
SRR6049655Rhizomagastrodiae_C368-T10_good_132.270
SRR6049656Rhizomagastrodiae_C368-T07_good_159.400
SRR6049657Rhizomagastrodiae_C368-T07_good_150.260
SRR6049658Rhizomagastrodiae_C368-T04_good_147.100
SRR6049659Rhizomagastrodiae_C368-T04_good_146.600
SRR6049660Rhizomagastrodiae_C368-T01_good_151.240
SRR6049661Rhizomagastrodiae_C368-T04_good_155.090
SRR6049662Rhizomagastrodiae_C368-T01_good_167.790
SRR6049663Rhizomagastrodiae_C368-T01_good_158.340
SRR6049664Rhizomagastrodiae_C368-T10_good_170.030
SRR6049665Rhizomagastrodiae_C368-T10_good_170.030
SRP279888GastroGastrodia elata tuber 95.91
JuvenJuvenile tuber88.48
Mother_GastroMother tuber of Gastrodia elata 57.32
Mother_JuvenMother tuber of Juvenile 89.54