Gene detail

Detail information of GWHGAAEX005644/evm.TU.scaffold_168.64

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0698	2.00E-140	Serine/threonine protein phosphatase
nr	gi\|720082258\|ref\|XP_010242534.1\|	0	PREDICTED: probable protein phosphatase 2C 35 [Nelumbo nucifera]
Swissprot	tr\|Q7XJ53\|P2C35_ARATH	5.00E-164	Probable protein phosphatase 2C 35
trEMBL	tr\|M5XCJ5\|M5XCJ5_PRUPE	1.00E-180	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23649.1}
TAIR	AT3G06270	2.00E-140	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000173	1716559	1734362	-

Transcript Sequence
>GWHTAAEX005644 CGTCTACATTGGGCAGCTTCCCTAAGAGTCAGGGCTACTTGGTCCTTTTCGCCGAGCTTTTGTCCTCCGCTTTCTTGAGTGTAGCTTTGTAAGTTTGTTGCTTCCTTGCGTTTTCAAGAAATCCTTACCTTTCTTCTATACCCACCCCTTTCCGGTGCGCTTAGCCACCGTTCCTCCAGCACACTCCAGCTTCTCTGATTCTGTCCTTCTCGCTTGTCGGCAACCCTTTTGCTTCATTAGTCCGGTTTCGAATCTGTTTTTTCCTTTGTTTGGTGCATCCATGTTCGAAGGATTTCCTGCGATTGTACTTACCAGGGTATTGGTCGAGAAGTAGCAGACAGGCGTCGGCGTCGCTCGTCTTGATGGGTTGTGTGCAGGCGAAGTGCTTCTCTAGATGTGGCTGCTGTTGTTACGCCCCCTCATCCGCCGGATCTTCTGGCCCTTGCCGCGGCGGCTTAGCCATCAGCGAGGCCGGTCTGCCTCGGAATCATGTTCTTACTGGTAGCACGGTGGGCTTCTCCGCCGTTATCTCTCATGGGCTCTCTCTTCAGTATTCTTCCCTTACACAGCGTGGCTACTACCCTGAAAGTCCTGATCGAGAGAACCAGGACGCAATATGCATCAGGACCAATCTCCAGGGAAACCCTAATCTTCATTTCTTCGGAGTTTTTGATGGCCACGGTCAGTTCGGCGCTCAATGTGCAAATTTTGTCCGAGATAAACTGGTTGATCTCTTGTCTGCCGACGCAGAACTAGTAGAGGACCCTGTGAAGGCTTATAACTCAGCATTTCTTGCGGTGAATTCTCTTCTACATAAGAGTGAGATCGATGATTCAATGAGCGGCACCACTGCTATAACTGTTCTTGTTAGTGGCGACGCACTGTTTGTTGCAAATGTTGGGGACTCCAGAGCTGTTGCTGGTATTTATGAAGGGGATCGCTTGGTAGCTGAAAACCTTTCACACGATCAGACTCCTTTCCGAAAGGATGAGTACGACAGGGTAAGGCTCTGTGGCGCGAGGGTTTTGACTGTTGATCAGGTTGAGGGGATAAAGGATCCCAGAATACAGTGCTGGGGCGATGAGGAGAATGATGAAGGAGATCCACCAAGGCTATGGATGCAGAATGCGATGTATCCTGGAACTGCATTCACTAGGAGTGTGGGTGACTATACTGCAGAGAGCATAGGGGTCATTGCTATTCCTGAGGTGCTGAAAGTAAAGATAACTCCGAATCATTTGTTTTTTGTCATTGCCAGTGATGGCATCTTCGAATTTCTTTCAAGCCAGGCTGTGGTTAGTATGGTGAGCAGTTTCAAGGATCCACGGGACGCATGCTCCGCACTTGTTGCAGAATCATACAAGATATGGTTGGAGCACGAAAGCCGAACGGATGATATCACAGTCATTCTTGTTCACATCAAAGATTTGTGCAATGTTGATAATGGAGCTCCTGATGATTCTGCCACACAAATGACGAAGAAAGCCTCTGTTTATTCTGAAAAAGCAAGAGCAGAGATGTATCTTTCTTCTGGGACGGCAGATCATAATTCGGAGAATTTATCAGAGGCGCAATTATCTTTTCTTGACCCTGCAACGGAAAAGAGCCCTGCATCAGTTGCTCCTTCCCCAGACAATCAACGCCTTTTGTAGCCTGATTATGTTTGGCCTGCATGCATGAAACACTTCAATGGGCTTTTTTCAACGCCCCCCTTAAGGTAATATTAATTTTGTTTTGGCAATAGATTTTGTTTTGATATTTTTGGTCTTGCTTGAGGCAGCTGTAGATGCTGTTGCAAAGGAAGCAATTGTGAAGTTGTAAATAAAGCTGTTGTTAGTATTGTTGTTTGGATGCGCTGCGATGCGAGTAAATAGGCATCGATTGTGATAGTAAGGGAGAAAGATAATTATTTTTCTAACCTAGACAGCAGAAAGCAGCTCTTTTGCGCTTTGGAAACTGCTTTTCTAAAAGCTTTCAAGGAGATACAAAATCGCTCCCTCAAACGGTAGTGAGCAGGTGAACAACTGCCTGGGCGCCAGAGTTTCGTGAGCAGAGTTTAACAGAATTGAAGAGGCGGCGAATGATCTGAGATCGTCGTTAAAAATTGATATCATCATCGACTTGGTATGTTAAAGTATATTCAACCTTTGTAATTAGCTCGTCAGACTGATGGGAATATAGATTCGATTGTAATTGTAAATTTCCTTTTTCTGCAAATTAATGAATTCCTGATGATCTTCTATGCGGGAGAAAGGAAACTATCTAGTCCAGATTCAAATTTTCCTTTTTCTGTTGGTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX005644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	81	333	4.10E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043169	Molecular Function	cation binding
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.280
SRP064423	SRR2545915	Juvenile tuber	14.360
SRP108465	SRR5643513	five period of Gastrodia elata	20.410
	SRR5643514	five period of Gastrodia elata	20.910
	SRR5643515	five period of Gastrodia elata	17.380
	SRR5643524	five period of Gastrodia elata	17.220
	SRR5643525	five period of Gastrodia elata	29.340
	SRR5643528	five period of Gastrodia elata	21.220
	SRR5643658	five period of Gastrodia elata	34.630
	SRR5643659	five period of Gastrodia elata	17.130
	SRR5643660	five period of Gastrodia elata	14.330
	SRR5643661	five period of Gastrodia elata	16.400
	SRR5643662	five period of Gastrodia elata	10.790
	SRR5643663	five period of Gastrodia elata	16.820
	SRR5643664	five period of Gastrodia elata	15.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.110
SRP279888	Gastro	Gastrodia elata tuber	13.74
	Juven	Juvenile tuber	21.22
	Mother_Gastro	Mother tuber of Gastrodia elata	16.64
	Mother_Juven	Mother tuber of Juvenile	18.68