Gene detail

Detail information of GWHGAAEX005645/evm.TU.scaffold_168.65

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1267	Mitochondrial transcription termination factor, mTERF
nr	gi\|695012695\|ref\|XP_009393113.1\|	PREDICTED: uncharacterized protein LOC103978886 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|F6HQ47\|F6HQ47_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56803.1}
TAIR	AT4G02990	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000173	1808384	1811589	+

Transcript Sequence
>GWHTAAEX005645 CAAACTTAGCTTCGTAGCCCCTCTTCCAATCGTTCAGTGGTTCATCCTACAAAGGTTTCCATCTTTCACTGAGATTTTTCCTCTCATGGTCTTCTCTTCAATCTTCTTGCCTAAAGATCGAAGTATTTAAAGAGTGAAGTTCGTTCGGTCTGTACAGCCATGAGGGCGCTCTTCCACAACTTTCTGCTCAATCCAATTCCTGCCCATCGCATCATCTTCTCTCATTCCAAATTCCCGGTAGGATGCTTCAGATTCCCATTCAAACGTGACTCAATCCCTAAAATCTTTTTGCTCTCCCTCAAGAACAATCACCGATCTGCATCGGCTTCACCTGCCAAGGCGGCTTCCTTAACGCTTTCCGAGTTGACATCCTCTTCTTTGCCTTCTCCATATTCTCCCCAGCTGCTAATCAATTTCAACAAAGAAAGAGACGAGAGCCGAACCAGAATCTATGAATTTCTGCGGAATGTCGGCATTGTGCCGAACGAACTCGACGGTCTGGAGCTTCCTCTGAAAGTCGAGATAATGAAGGAGCGCATTGACTTCCTTCACTCCTTAGGCCTAACCATTGATGACATAAACAACTATCCTTTGGTCCTCGGATGCAGTGTGAAGAAGAACATGCTTCCTGTTCTTGATTACCTCGGTAAGTTAGGGCTTCGGAAATCCACCTTTACGGATTTCCTCCGGCGATACCCGCAAGTCCTTCACTCGAGTGTCGTCATAGACCTAATGCCTGTAGTAAAATATCTCCAAGGATTGGATATTAAGCTAGCTGACATCCCTCGGGTTCTTGAGAGATACCCAGAGCTGCTCGGTTTCAAATTAGAGGGTACTATGAGCACTTCTGTGGCATATTTGGTAGGAATTGGAGTTGCAAGAAGAGAACTTGGAGGAGTTCTTACTCGTTATCCTGAAATTCTGGGCATGCGTGTAGGTAGATTTATCAAGCCTATTGTTGAGTATCTTGAGTCCCTCGGATTGCCCAAGGTTTCTGTGGCAAGAATAATTGAGAAGAGGCCTCATGTGCTTGGCTATAGCTTGGAGGAACAAGTGAAGCCTAATGTGGTTGCTCTCATGGAATTTGGCATAAGGAAGGATTCACTGAGCTCTGTAATTGCTTGGTATCCAGATTTGTTGGGGATGGAATTGAAGGAGAAGCTGGCTTTGCAGCAGAACTTGTTTGAATCGAATTTGCTCGCAAACCACGATGAGTTTGTGAGGATCATTGAGAAGATGCCTCAGGTTGTTGTGCTTGGCAGCAAGGCTGTTTTGAGGCATGTTGATTTCTTAAGGTGTTTAGGGTTATCTTTGAAGCAAATGAGCAACATGGTGATAGGATGCCCTCATATACTTGCATTGGATATAAATGTGATGAGGACCAGCTTTGAGTATTTTAAGATGGAGATGGGGAGGAATTTGGAAGAACTTGTGGAATTTCCAGCTTACTTTACGTACTGCCTGGAGTCGACGATAAAGCCCAGGCATATGATGATTGCTAAGAATGGATTGAAGTGTTCTTTGGCATGGATGCTTGCTTGCTGTGATTCAAAGTTTGAAAACCGGATGAAATACGACTCGATTGGAATCGAGGAAATGGAAGTGGAACCATTGTTTAACATGACATCTTTACTGGAGCCAAGGGAGGAAGAGGAAGATGAGCCTGAGGAAGATTCTAATTCAGACTATGATGATGAATATGACAATGAAGCTGAATTTTTGTGATTGTTTTGTGTTTCTGTTTGCACAAGAAGCTACGGTTTTTAACTGATAGTTGTTTGGTCGGAAACCCTATTGGATAATTCTAGTCTATAGAAGATGTCTAGCTTGAAGAATTAATGCTGCATGTAGGCTATTGTTCTATCAAATCTCAATTTTAGATGATGAAGGCTTAAATTGCATGCCTACCGCACATATTTACAGTTCTGTTATGGTGTGGAAATCAATCAGCAAGGAGAGTGCAATTGATGTTCTGATGGATTTTGGGACGGATCTATAGAGTTAGACAGAAGGTCTAGCTCCCAAACGCCCAGCACACAGAAGATTTGGCGCTCAGACGCGCTCGCCCAGGCGTGCCCGAGAGCCTAAGAAGCAACAAGGCAGGCGCCCGCAAAATTTCCAGCTCTGGTGTGATGTGTCAAGCACTAATTATGGCACTTTGAGGGTTGTTTGGGATCCCATATAAATTTTAACATGTTGGGTTAAGGTTTAATGTGTCATTTCTCTGTGAGAGTTCTTGGAGGCTTGAAACTCTAGAG

Network for GWHGAAEX005645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.13	mTERF	159	467	6.30E-101

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003690	Molecular Function	double-stranded DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.200
SRP064423	SRR2545915	Juvenile tuber	3.770
SRP108465	SRR5643513	five period of Gastrodia elata	5.190
	SRR5643514	five period of Gastrodia elata	4.670
	SRR5643515	five period of Gastrodia elata	5.260
	SRR5643524	five period of Gastrodia elata	4.170
	SRR5643525	five period of Gastrodia elata	3.190
	SRR5643528	five period of Gastrodia elata	3.640
	SRR5643658	five period of Gastrodia elata	2.450
	SRR5643659	five period of Gastrodia elata	3.160
	SRR5643660	five period of Gastrodia elata	3.120
	SRR5643661	five period of Gastrodia elata	2.470
	SRR5643662	five period of Gastrodia elata	3.210
	SRR5643663	five period of Gastrodia elata	3.140
	SRR5643664	five period of Gastrodia elata	2.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.540
SRP279888	Gastro	Gastrodia elata tuber	2.10
	Juven	Juvenile tuber	3.32
	Mother_Gastro	Mother tuber of Gastrodia elata	2.93
	Mother_Juven	Mother tuber of Juvenile	2.63