Detail information of GWHGAAEX005649/evm.TU.scaffold_168.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-113 | FOG: PPR repeat |
| nr | gi|695036480|ref|XP_009405698.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LS72|PP261_ARATH | 7.00E-114 | Pentatricopeptide repeat-containing protein At3g29230 |
| trEMBL | tr|M5WRM2|M5WRM2_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ11953.1} |
| TAIR | AT3G29230 | 2.00E-113 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 2014149 | 2016182 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005649
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 242 | 270 | 0.0034 |
| PF01535.19 | PPR | 273 | 302 | 1.50E-07 |
| PF01535.19 | PPR | 304 | 334 | 3.30E-08 |
| PF01535.19 | PPR | 377 | 399 | 0.065 |
| PF13041.5 | PPR_2 | 402 | 451 | 8.30E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.920 |
| SRR2545915 | Juvenile tuber | 0.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.360 |
| SRR5643514 | five period of Gastrodia elata | 2.970 | |
| SRR5643515 | five period of Gastrodia elata | 3.280 | |
| SRR5643524 | five period of Gastrodia elata | 2.890 | |
| SRR5643525 | five period of Gastrodia elata | 1.930 | |
| SRR5643528 | five period of Gastrodia elata | 5.420 | |
| SRR5643658 | five period of Gastrodia elata | 1.530 | |
| SRR5643659 | five period of Gastrodia elata | 4.940 | |
| SRR5643660 | five period of Gastrodia elata | 4.540 | |
| SRR5643661 | five period of Gastrodia elata | 5.750 | |
| SRR5643662 | five period of Gastrodia elata | 5.670 | |
| SRR5643663 | five period of Gastrodia elata | 4.060 | |
| SRR5643664 | five period of Gastrodia elata | 5.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.29 |
| Juven | Juvenile tuber | 4.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.21 | |
| Mother_Juven | Mother tuber of Juvenile | 7.46 |