Detail information of GWHGAAEX005651/evm.TU.scaffold_168.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0046 | 0 | Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily |
| nr | gi|743806148|ref|XP_010927611.1| | 0 | PREDICTED: fimbrin-2-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|O50064|FIMB2_ARATH | 0 | Fimbrin-2 {ECO:0000305} |
| trEMBL | tr|M0T1L4|M0T1L4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P25390_001} |
| trEMBL | tr|M0T1L4|M0T1L4_MUSAM | 3.00E-06 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P25390_001} |
| TAIR | AT5G48460 | 0 | Actin binding Calponin homology (CH) domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000173 | 2078989 | 2133609 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005651
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00307.30 | CH | 130 | 236 | 3.20E-18 |
| PF00307.30 | CH | 267 | 369 | 1.60E-19 |
| PF00307.30 | CH | 393 | 496 | 4.60E-19 |
| PF00307.30 | CH | 517 | 603 | 2.60E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.800 |
| SRR2545915 | Juvenile tuber | 3.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.340 |
| SRR5643514 | five period of Gastrodia elata | 4.260 | |
| SRR5643515 | five period of Gastrodia elata | 3.820 | |
| SRR5643524 | five period of Gastrodia elata | 3.430 | |
| SRR5643525 | five period of Gastrodia elata | 1.590 | |
| SRR5643528 | five period of Gastrodia elata | 1.380 | |
| SRR5643658 | five period of Gastrodia elata | 2.260 | |
| SRR5643659 | five period of Gastrodia elata | 0.820 | |
| SRR5643660 | five period of Gastrodia elata | 0.730 | |
| SRR5643661 | five period of Gastrodia elata | 0.940 | |
| SRR5643662 | five period of Gastrodia elata | 0.490 | |
| SRR5643663 | five period of Gastrodia elata | 0.790 | |
| SRR5643664 | five period of Gastrodia elata | 0.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.90 |
| Juven | Juvenile tuber | 1.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.29 | |
| Mother_Juven | Mother tuber of Juvenile | 0.60 |