Gene detail

Detail information of GWHGAAEX005656/evm.TU.scaffold_168.80

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2945	5.00E-21	Predicted RNA-binding protein
nr	gi\|743802637\|ref\|XP_010926667.1\|	9.15E-33	PREDICTED: protein argonaute 3-like [Elaeis guineensis]
trEMBL	tr\|M0RSF1\|M0RSF1_MUSAM	2.00E-28	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P15210_001}
TAIR	AT4G17520	5.00E-21	Hyaluronan / mRNA binding family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000173	2209513	2240610	+

Transcript Sequence
>GWHTAAEX005656 ATGGCTCGCCAGGAAAATCCCTTTGCCCTTCTCGGCGATGACGAGGAAGGTGCTGATGTTTCGGTTCTTCTCGCTAAGCTCGAGGCTATGACGCCTACTCTGCCTCCTCCCGCTTCAGAGCAGACTAAACCGTCAAAGCAGAAGGCTGTATCAAATGGTTTTCCATCTAAGTTTCCTGCAATGATTGATCTTGGGAAAGGAGAAAGAGGCAGGGGAAGAGGCGACAGGGGCCGGGGTTCAGGAAGGGGTGGATTTGGAAATGTTGTTGTTGGTGATGCCGTTAATCATGCAGAGCATTTGCATGATAGTGGTTACGATGGTGAATCAAGTGGTGAGCGCAGCCGTGGGCGTGGTGGTAGAGCTGGATTTGGCCGGGGTTCAGGAAGGGGTGGATTTGGTAATGTTGGTGGTAGTGATGCCATTGACCAGGCAGAGCATTTTCATGATAGTCGTTACAATGGTGAGTCAGGTGGTGAGCGCAGCCGTGGATGTGGTGGTAGAGCTGGATTTTCCCGTGGCTCAGGAAGGGCTGGATTTGGTAATGTTGGTGGTGGTGATGCCATTGATCAGGCAGAGAATTTTTATGATAGTGGTTACAATGTTGAATCAGGTGGTGAGCGCAGCCGTGGGCTTGGTGGTAGAGCTGGATTTGGCCGTGGAAGGGGGCGAGGTTTTGGTCGGTTTGGTAACAGGAATCTGCCCGACTATGGGAACCCTATAGATAACGGAGAAGATGAGTTACAAGAAATAGGACACTATGTTGAGAGGCAGCCACCGAGGTATGACAGCCGAAATTTTGAGGGTAATCAAGGAGCAGATAGAGAGGAGCGAGAGAGCCATGAGTTTAGAGGATATGGGGCTGGTCGTGAGAATCGTGGCTTAAGGAGACTGGGAGTTGACACGGGGAACCGGGATTTTAGGGATCAAGAGCCGAACGAAAGTAGTTATGGTGGTGATGGGGAGAGCCGTGGATTTAGAGGTGGCGAGAACCGTGGAAGAGGATATGGTGGAAGAGGCCGAAGGGGTGGCCGCGATGGTGGTGGAGGCGGTGGTGCTAGAAATGAACTAAATGAAGGATGGTATCTATCGGCAACTAAAGAGGTTTCTGCTGATGAAAAGGAGCCAATTTTAAACAATACCAATGATAGAGATGCCAGCTTTGGATGGGATGATCCTAGTGGTCCCGATGAGCCAAAGGATGTAGAGTCTGTAAAGCTATTGCCTGAGCAAACTGCTTATGAAGATACTTCTAAAACTCCTCAAGAGGACAATGAAATGACTCTTGCTGAGTATGAAAAACTGCTGCAAGAAAAGAGAAAGGCCTTTGAATCATTTAAGACACAGACTAGGAAAGTTGTTCTTGACAAGGATTTTGAGGGGATGCAAATCATTGATAGAAAGAAAGAGGATGATTCTGCAAAAATGAAATTGGACAATGACAAAGGAAAGAAAAAGGATATCAGTGAAAGGGAAGACAAATCTCGCAAGTCGCTGAATATCAACGAATTTCTCAAGCCTGCTGACGTGGAGAGGTTTAGAGGGCCCACTGCATCTTCTCGCAGCGGGCGTGGCAGGAGGGGTCGTGGACGTGGTGGCGGATACACAACTGATCATCCGACCAGCCGGGCTGCAGCTGCAGCCCCTTCTCTCGAAGATCCCACACATTTTCCTAATCTTGGCGGACAGAGTCGCCAAAGCCTAATTTTGTAG

Network for GWHGAAEX005656

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04774.14	HABP4_PAI-RBP1	364	452	3.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	90.630
SRP064423	SRR2545915	Juvenile tuber	102.820
SRP108465	SRR5643513	five period of Gastrodia elata	83.920
	SRR5643514	five period of Gastrodia elata	68.000
	SRR5643515	five period of Gastrodia elata	65.520
	SRR5643524	five period of Gastrodia elata	69.440
	SRR5643525	five period of Gastrodia elata	50.780
	SRR5643528	five period of Gastrodia elata	46.110
	SRR5643658	five period of Gastrodia elata	34.930
	SRR5643659	five period of Gastrodia elata	106.040
	SRR5643660	five period of Gastrodia elata	109.310
	SRR5643661	five period of Gastrodia elata	102.520
	SRR5643662	five period of Gastrodia elata	93.640
	SRR5643663	five period of Gastrodia elata	99.570
	SRR5643664	five period of Gastrodia elata	102.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	75.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	78.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	64.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	65.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	72.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	66.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	66.700
SRP279888	Gastro	Gastrodia elata tuber	103.50
	Juven	Juvenile tuber	127.61
	Mother_Gastro	Mother tuber of Gastrodia elata	52.94
	Mother_Juven	Mother tuber of Juvenile	87.29