Gene detail

Detail information of GWHGAAEX005658/evm.TU.scaffold_169.10

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2548	3.00E-139	SWAP mRNA splicing regulator
nr	gi\|672170443\|ref\|XP_008805278.1\|	0	PREDICTED: CLK4-associating serine/arginine rich protein isoform X4 [Phoenix dactylifera]
trEMBL	tr\|M0T5R6\|M0T5R6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P10170_001}
TAIR	AT4G36980	3.00E-139	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000162	663794	674445	+

Transcript Sequence
>GWHTAAEX005658 ATGTGGCACGAGGCTAGGAGGTCGGAGAGAAAAGTTCACGATCTGATGGACGCCGCCCGAAGGCGCGCACAACGTCGCGCTGTATTTCTTGCCAAGAGGCGCCGCGATCCTCAGCAATCGCTTCAGGTCATCGGATCTCGATGCCGCGTCCATCGCGACGAAGGGCTCTACCAAGCCACTCAGGATCAGCAGGGCCTGATACCATGGAATGGGAAGCAGGATATTTTGATCGATAGGTTTGATGGCCGTGCTCTGCTAGATTTCATTCGAGATTCCAGCTCTCGACCTTTCCGAGCACCGGAAAAGTCCGAGGAAGATGAAGAATTAGAAGAGTTTGTTAATTTTGAGCGTTACCGGGATTTAATTAAGCATCGACGTAGAGGATATACTGATGAAGAAGCCCTGCGACATGTTTTTGAAGAATTTGAGGCAAAATCCACTCCTTGCTTTACTTTAGAAAGGACCCACTCACTGCAACCAGCAACAAGTAAAGGTTCTTATTCACAGGTTGGATTTTCCTATAAAGGAGATGGCAGTGAGGAGCTGCATACCGTTGATAGTGATGAAGATGATGAAGATGAGGACGATGATGATGATGAGAAGGATGTAAGTAGTGATGATAGCAATGATGAAGGAATGGAGTTGATTGCAAAAGATTTTGGTATTAAGAGGTATAATTGGCTTGTTTATATGGATAAAAAAGCCAAGGAGGAAGAGAAAAGACAAAAAGAAGTAATTAGAGGGGATCCATCTATTAGGAAATTAAGTCGAAAAGAAAGAAGGAAAGCTTCTCAGATTGAAAGGGAAAAGGAGAGAGAATCTGCACGTATTCACGGAAGAGCACTTTATAGTGATCCTTATAGGGAAGCTCGCCGAAGTCCCACATATGAAGCTTATCCTCACTTCAGGAGATCAAGGTCTAGGTCCAGGTCACATTCACCTTCATACTCAAGGAGACATGACAGAGGGACACATTCTGACAATGGCCATAGAAGCAGACCAAAGACTCCAAAAATTGAGTATATTACAGAGTTTGGGGGCTCAAATGACATTCATGAACCGAAACTTGGAGCAATTTCTCCACCAACATCTCCATTACAAGATGATACACAGAACTGGTCTTCTGGAAGTCGCATACTCGAAGCATTGCATGTTGATCCTGCATCAGCTCTGTCTCTAGAAAATGACAAAAACATTAAGATCTCAAGAAATGCAAGCAACACAGGAATTGCAAAGCTTAGCAAAGCTATTCCTGTGGGATCCCTTAAAGTTGAGCAGATTGAAAAGAAGGAAACACCTCAAGAACGTCTTAAAAGGATAATGAACAAACAGCTGAACAAACAAATTAAGAAGGATTCTGCAGCAGAAATGGCCAAGAAACGGGAGCAGGAACGACAAAGGTTGGAAAAGATTGCCGAAACTAGTAAATTAAGTCGCTACAGACACGATAGTCATAGTAGAAGCCGGAGTCGTTCGCCAGTAAGAAAGCGTGGGCGCAGCAGAAGCCGTGGACGGAGCCGAAGCAGGAGTCCGAGAAGATATCATTCTCGCTCGAGCTCACGGTCGCGCTCTCCCTCCAGTTCTTCTCCCAGGGTAAGAAGTCGATCCAAAAGATAA

Network for GWHGAAEX005658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09750.8	DRY_EERY	41	176	4.20E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	96.650
SRP064423	SRR2545915	Juvenile tuber	83.170
SRP108465	SRR5643513	five period of Gastrodia elata	66.320
	SRR5643514	five period of Gastrodia elata	67.120
	SRR5643515	five period of Gastrodia elata	61.040
	SRR5643524	five period of Gastrodia elata	64.590
	SRR5643525	five period of Gastrodia elata	75.300
	SRR5643528	five period of Gastrodia elata	52.430
	SRR5643658	five period of Gastrodia elata	71.630
	SRR5643659	five period of Gastrodia elata	84.610
	SRR5643660	five period of Gastrodia elata	95.410
	SRR5643661	five period of Gastrodia elata	76.050
	SRR5643662	five period of Gastrodia elata	74.680
	SRR5643663	five period of Gastrodia elata	90.220
	SRR5643664	five period of Gastrodia elata	92.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	80.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	69.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	96.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	102.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	108.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	86.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	91.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	78.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.640
SRP279888	Gastro	Gastrodia elata tuber	138.44
	Juven	Juvenile tuber	90.73
	Mother_Gastro	Mother tuber of Gastrodia elata	81.58
	Mother_Juven	Mother tuber of Juvenile	90.54