Detail information of GWHGAAEX005673/evm.TU.scaffold_17.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|313124875|ref|YP_004035139.1|2.00E-16translation initiation factor 1a (aeif-1a) [Halogeometricum borinquense DSM 11551]
KOGKOG34035.00E-88Translation initiation factor 1A (eIF-1A)
nrgi|743755610|ref|XP_010912398.1|4.04E-98PREDICTED: eukaryotic translation initiation factor 1A [Elaeis guineensis]
Swissprottr|P56331|IF1A_ONOVI3.00E-91Eukaryotic translation initiation factor 1A
trEMBLtr|B9SSH7|B9SSH7_RICCO5.00E-98Eif-1a, putative {ECO:0000313|EMBL:EEF33420.1}
TAIRAT2G045205.00E-88Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000184040241273+
Transcript Sequence

Network for GWHGAAEX005673

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01176.18eIF-1a32932.50E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03236EIF1A RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006413Biological Processtranslational initiation
GO:0003723Molecular FunctionRNA binding
GO:0003743Molecular Functiontranslation initiation factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms686.510
SRR2545915Juvenile tuber678.920
SRP108465SRR5643513five period of Gastrodia elata563.790
SRR5643514five period of Gastrodia elata432.160
SRR5643515five period of Gastrodia elata418.670
SRR5643524five period of Gastrodia elata432.180
SRR5643525five period of Gastrodia elata536.610
SRR5643528five period of Gastrodia elata465.670
SRR5643658five period of Gastrodia elata436.570
SRR5643659five period of Gastrodia elata531.940
SRR5643660five period of Gastrodia elata641.710
SRR5643661five period of Gastrodia elata594.740
SRR5643662five period of Gastrodia elata563.870
SRR5643663five period of Gastrodia elata592.170
SRR5643664five period of Gastrodia elata720.480
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11091.070
SRR6049655Rhizomagastrodiae_C368-T10_good_11008.080
SRR6049656Rhizomagastrodiae_C368-T07_good_1973.740
SRR6049657Rhizomagastrodiae_C368-T07_good_11227.130
SRR6049658Rhizomagastrodiae_C368-T04_good_11991.610
SRR6049659Rhizomagastrodiae_C368-T04_good_11798.980
SRR6049660Rhizomagastrodiae_C368-T01_good_11539.690
SRR6049661Rhizomagastrodiae_C368-T04_good_11739.350
SRR6049662Rhizomagastrodiae_C368-T01_good_1780.170
SRR6049663Rhizomagastrodiae_C368-T01_good_11174.650
SRR6049664Rhizomagastrodiae_C368-T10_good_1805.760
SRR6049665Rhizomagastrodiae_C368-T10_good_1805.760
SRP279888GastroGastrodia elata tuber 1,246.85
JuvenJuvenile tuber532.12
Mother_GastroMother tuber of Gastrodia elata 399.09
Mother_JuvenMother tuber of Juvenile 358.60