Detail information of GWHGAAEX005676/evm.TU.scaffold_17.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|219851189|ref|YP_002465621.1|8.00E-14Ribosomal protein L24E [Methanosphaerula palustris E1-9c]
KOGKOG17234.00E-7960s ribosomal protein L30 isolog
nrgi|743765486|ref|XP_010912964.1|2.67E-102PREDICTED: probable ribosome biogenesis protein RLP24 [Elaeis guineensis]
Swissprottr|O22165|RLP24_ARATH1.00E-79Probable ribosome biogenesis protein RLP24
trEMBLtr|A0A068UG16|A0A068UG16_COFCA1.00E-100Coffea canephora
TAIRAT2G448604.00E-79Ribosomal protein L24e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000018173473194937+
Transcript Sequence

Network for GWHGAAEX005676

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01246.19Ribosomal_L24e1655.70E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02896RP-L24e, RPL24 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms129.800
SRR2545915Juvenile tuber110.600
SRP108465SRR5643513five period of Gastrodia elata86.630
SRR5643514five period of Gastrodia elata83.310
SRR5643515five period of Gastrodia elata88.740
SRR5643524five period of Gastrodia elata79.210
SRR5643525five period of Gastrodia elata74.000
SRR5643528five period of Gastrodia elata78.270
SRR5643658five period of Gastrodia elata52.410
SRR5643659five period of Gastrodia elata137.190
SRR5643660five period of Gastrodia elata151.790
SRR5643661five period of Gastrodia elata161.180
SRR5643662five period of Gastrodia elata148.790
SRR5643663five period of Gastrodia elata143.980
SRR5643664five period of Gastrodia elata163.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_175.290
SRR6049655Rhizomagastrodiae_C368-T10_good_193.880
SRR6049656Rhizomagastrodiae_C368-T07_good_168.960
SRR6049657Rhizomagastrodiae_C368-T07_good_185.710
SRR6049658Rhizomagastrodiae_C368-T04_good_177.860
SRR6049659Rhizomagastrodiae_C368-T04_good_184.850
SRR6049660Rhizomagastrodiae_C368-T01_good_176.450
SRR6049661Rhizomagastrodiae_C368-T04_good_178.620
SRR6049662Rhizomagastrodiae_C368-T01_good_181.290
SRR6049663Rhizomagastrodiae_C368-T01_good_183.500
SRR6049664Rhizomagastrodiae_C368-T10_good_191.300
SRR6049665Rhizomagastrodiae_C368-T10_good_191.300
SRP279888GastroGastrodia elata tuber 163.35
JuvenJuvenile tuber107.20
Mother_GastroMother tuber of Gastrodia elata 95.69
Mother_JuvenMother tuber of Juvenile 101.73