Gene detail

Detail information of GWHGAAEX005677/evm.TU.scaffold_17.6

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2190	0	PolyC-binding proteins alphaCP-1 and related KH domain proteins
nr	gi\|672119807\|ref\|XP_008783151.1\|	0	PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|P58223\|Y4837_ARATH	6.00E-42	KH domain-containing protein At4g18375
trEMBL	tr\|M0S868\|M0S868_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P15270_001}
TAIR	AT5G53060	0	RNA-binding KH domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	197370	229839	-

Transcript Sequence
>GWHTAAEX005677 AAATTTATCACGAGAAAAAGTAATTTACATTTCCCAACTAAGCGAAGATTCACTCCAAGCCTCCGAGGAACGGCAGGAGAGTAGAATCCCCTGCAAGTGTTTTGCTGGAACTTGGAATGGATCGACCTCGCTCTAAGCGGAACTACCACCATTACGATCAGGACTCCGATTCCCAGACTCCTCCCCCTTTCCATCGAGCCAAGCCTCGCTACGAAGGGGGAAACCATCGGCGCCCTAGTCATCATCGCCGGAGCAACGATCGTCGGCCGCATCCTCCGCCTCCGCCTCCCCCTCTGCCTCCCCCTCCCCCTCCCCCGCCTTCCTCGTCCTCCTCAAAGTTTCCCGACGGATCCCCTCCAGCCAGCTCAGTCACGACGTTCTTCCGCTTGCTCTGTTCCGATGCCAAAATCGGCGGCGTCATCGGCAAATCCGGCAGTATTATCAAGAACATCCGGCAGGACACTGGTGCTTGGATCAATGTTCATGATCTACTCCCTGGAGATGAAGAGCGAATCATTGAGACGGCAGATAGTCGGAGGCGGGAGCAGGATGGCCGGCCGCCCCAGTACTCACCTGCGCAAGAGGCACTTCTGTTGATTCACGAGAGGGTATTGGATCTGGATTTTGAAGATGGGGACGTCGACGAGGATGGACTTGAGGGGGACAGCGGCATGTGGGGAGCAAGTGAGAAGAGTAGGGAGAAAGGTCGCTTGACCACGAGACTAATAGTTCCGAGAATGCATGTCGGGTGCTTGCTGGGGAAAGGAGGGAAGATCATCGAGCATATGAGGAATGAAACCAGAACTCACATTAGGATCTTGCCGAGAGATCAGTATACGCCGAGATGCGTATCTATGTCCGAAGAGATTGTTCAGATTTTTGGGGAGGCTAGTTGTGTGAAGAAAGCTGTGGAAATTATTTCATCTCGTTTAAAGGAGAGCTTACATCGTGAACGTGGTCCTTTTCGTGGTCGTATTCACTCACCCGAGGGCAATTATCCTGATGATGATTTTATAAGCAATACTCAACATCAATCAGCATTTGAAAGAGATGATTTAGGATTAAGAACATCTATTTGTTCAACAAGAGTTAGAAGCAGTGTCTATGGTTCAGAAAACAATTATATTCTTGATTCTGATGCTGATGCAACAATTGACCGTCCACAATCATTTTATAGTGAGGACATTGTGTTTCGTATTCTTTGCCCTAGTGATAAAGTTGATGCTATTATCAGTTTTCCTAATGGAATCAGTGAAATGCTTCGAACTGATGTGGGTGTAGATGTGAAGGTAACTGATCCTGTGGAAGGTTCAGATGAACGAGTTATTGTGATCACTTCTATTGAGGGACTAGATGATGAGCTGTTTCCAGCTCAAGAAGCATTACTCCATGTGCAGACACACATTGTGGATCTGGGTCCTGACAAAGATAACATCATAACAACACGGCTTCTAGTTCATGCTTCTGAAATTGAATGTTTGGAGGGGAAAGATGAATCATTATCAGATTTTCATAGATTGACTTGCGCCAATGTGCAGGTCCTACCAAAAGATGACCTTCCGCTTTGTGCATTGGAGACGGATGAGCTCATTCAGATTGTTGGGGAGATACGTGCTGCTCGAAAAGCTCTTGTTCTGGTAACCACAAAGTTACGGGGCTTCCTTTATCGTGACATTGTCACATCTGAAGATATGATACCTTCTACCTTTCCTGCCACAAGCTATGTTGGTAAGGTTGCTGGACTTGAATCTGGTTCTACTAGAAGTTTGGCTTGTGATGGCTATCAAGGAAACGATCCCCCTATTGCATCTTTTGATAGTATTCGCAGTTCATCAGCAAATTGGTCATCAAAGGATGCCACAAGTGGCCCATCTGGGACATTGGAACAGGAGCAAAACCGCAATAATGATAGTGGGAGGCAAAGCAGTTTGAAAAGGTTTAGTGCTCCTCTCGTTACCAAGAGTACATTTGAGGTCGTGATACCAGTAGAGGCAGTTTCAAGCTTAATTACAAAATCAGGGAACAAGCTTGCTCAGATAAGTGAGATATCTGGTGCAACCATGACACTACTTGAAGATAGGTCTGATTCTAGTGATAAAGTTGTTCAGATATCAGGAACTCCAGAGCAGGCTGAGAGAGCTCAGAGCCTGCTCCAGGGATTCATACTAAGCACATTATGATTTGCTGTCTTTTGCTGAAGATGGTATGCCCTCAAAACTGGCCTTCTGAAAGGCAGCAAATGGGTCACGGAGATTATAGGCACTTGGAGCTTCACGAGAGGAGGATTGAGCTCTTTACTTTGGAGGCCAAGACCACTGAGATTAGTATGTTCATTATTTTTCTTAAGTGATGTGATATTAAACCTTAGTGGTCTTTAGATGATGATGATTTTATAATGTGATGAGTGGAATATTTTATTTTCTTATTTTACTTAATTTGTTTAATATGATAATGTGATCATTACACTAAGGGCTCTCGTAAGTAAGCTGACCGACAGGGGTCTTGGGTGTAGGTGTAACATAAGACGTGGAGGGTTTCTGGATGCGCTTTTGGTTGGGCAA

Network for GWHGAAEX005677

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00013.28	KH_1	90	135	1.00E-08
PF00013.28	KH_1	200	269	2.20E-13
PF00013.28	KH_1	617	680	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.840
SRP064423	SRR2545915	Juvenile tuber	21.470
SRP108465	SRR5643513	five period of Gastrodia elata	15.840
	SRR5643514	five period of Gastrodia elata	13.410
	SRR5643515	five period of Gastrodia elata	14.130
	SRR5643524	five period of Gastrodia elata	13.000
	SRR5643525	five period of Gastrodia elata	14.160
	SRR5643528	five period of Gastrodia elata	15.540
	SRR5643658	five period of Gastrodia elata	14.830
	SRR5643659	five period of Gastrodia elata	12.070
	SRR5643660	five period of Gastrodia elata	13.410
	SRR5643661	five period of Gastrodia elata	13.130
	SRR5643662	five period of Gastrodia elata	11.750
	SRR5643663	five period of Gastrodia elata	13.800
	SRR5643664	five period of Gastrodia elata	12.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.720
SRP279888	Gastro	Gastrodia elata tuber	14.23
	Juven	Juvenile tuber	21.57
	Mother_Gastro	Mother tuber of Gastrodia elata	16.74
	Mother_Juven	Mother tuber of Juvenile	16.64