Gene detail

Detail information of GWHGAAEX005685/evm.TU.scaffold_17.16

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672107405\|ref\|XP_008809498.1\|	1.55E-101	PREDICTED: reticulon-like protein B18 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q6DR04\|RTNLQ_ARATH	2.00E-75	Reticulon-like protein B17
trEMBL	tr\|M0SBE0\|M0SBE0_MUSAM	6.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P03220_001}
TAIR	AT5G58000_1	6.00E-43	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	444401	447370	-

Transcript Sequence
>GWHTAAEX005685 CAGTTTAAAAACAGTCTTTCTCCTTAATGAAATTTCTTAAAATCCAGGAATCAATTGAGAAAGAAAAGGATTGCAAAGGATAAAAGAAAGACTGCCGTCATAGTCAATGGAGTCTTCACCTCCCACGACTCCTCCCTCTCGAAAATCCAGACCCGTCAACGACTCAATCGATAGCCAAACCCTAACCTCCCCTTCCCCACATCATCTCACCATCCACGAAATTCTCCTACTGCCCTCTTCACCTAATAAACGGTCCAAATGCCGCCACCTTGCCGTCCCAATCTCTCCCAGGAATGGCCGGAGGACGAGGAGGAAAGTGGAGAAGGAGATTTTGAGGGAGGAGAGGGATGGGGAAGATGAGGCTGCCAAGTTGAAGAAGCGAAGGCAGAGCAGATCTCGCCCTAATCGAAAGGAAAATTCAAGTTTCGCCCATTCGCTTCCGTCTTCCGCGTCAACGAAACAAGATAACCTTTTTATAGATGGACAAAATTGCTTGGACGGAATCTGTAAAGCTGTTACAGATCTTGTAATGTGGAAGAATGTTGCAAGATCCTGTCTTTGGTTTGGATTTGGATCAATTTTGTTTCTCTCCTCCATTTTGTCTGGAGACGTTGGTTTCAGCATAATATCAGCAGTATCTCATTTGGGAATTCTTATTTTGGGCTCGGTATTTTTCTGTGATACAATTAGACAAAGAAAACAAGAGAAGAAGAAACCTGCGGTTCTCCACATAACAGAGGAGGATGCTCTTCGAGTCATTCGAATAATTTTACCAGTAATCAATGCCGTTCTTTCAAAGTGTCAAGAAATTTTTTCTGGAGAGCCACTGATGACTCTCAAAGTGGCACCAGTTCTTCTTTTCTTGGCAAGATATGGTCATTTGACAACCCCATGGAGGCTTTTGGCAATAGGTTTTTTCCTGAGCTTCACTGTGCCAAAATTGTACTCCTGCTATTACTATAGCATACAACAGAGAGTTGAAGAATGTAAGAATTATGTCTTGGAATCTTGGAGAAATTGTTCTCGCAAGAAGATGGTAGCTATATCAGCGGTAGCTTTATTGTGGAATGTTTTTAGCGTAAAAATGAGAATTTTTGCAGCATTCATCTCAGTGGTTCTTCTTCGCTATCTTCATGAACAACCTGTAGTTTCAGAATGCGTACCAGAAGAGACAGAAATAGAAGAAGAAGAAGAAGACAATAAGGATAAGGAGAATATGGAAGGGGGATTACATGTACTAAACCAAGAAGAGCAACCAAAAAGCAAGGAAGAAGAGAAAACACAACCAATGGAATAGTTAGAAGATTAATTATTGATGTTGATAGAGAAACTTTGGACTTGCAACTTATGATTTTTACTAGCTGATATTAGTAAGCAATGCAATTTTATTGCCAACAAGTATGTATACAACTAAAATTCTTGATTGATAACAAAAATTTTTGGTTCACAATATGAATACAGC

Network for GWHGAAEX005685

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02453.16	Reticulon	137	292	8.00E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.870
SRP064423	SRR2545915	Juvenile tuber	0.980
SRP108465	SRR5643513	five period of Gastrodia elata	1.530
	SRR5643514	five period of Gastrodia elata	2.830
	SRR5643515	five period of Gastrodia elata	2.160
	SRR5643524	five period of Gastrodia elata	1.590
	SRR5643525	five period of Gastrodia elata	0.380
	SRR5643528	five period of Gastrodia elata	0.230
	SRR5643658	five period of Gastrodia elata	0.340
	SRR5643659	five period of Gastrodia elata	0.050
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.880
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	1.41
	Mother_Juven	Mother tuber of Juvenile	0.71