Detail information of GWHGAAEX005691/evm.TU.scaffold_17.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|302036416|ref|YP_003796738.1|2.00E-09hypothetical protein NIDE1052 [Candidatus Nitrospira defluvii]
nrgi|743755559|ref|XP_010912135.1|3.77E-119PREDICTED: F-box protein SKIP8-like [Elaeis guineensis]
Swissprottr|Q93YV9|SKIP8_ARATH4.00E-91F-box protein SKIP8
trEMBLtr|M0TKB7|M0TKB7_MUSAM6.00E-113Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P24310_001}
TAIRAT4G239603.00E-40F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000018675257691282+
Transcript Sequence

Network for GWHGAAEX005691

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13474.5SnoaL_31622777.10E-19
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.060
SRR2545915Juvenile tuber11.710
SRP108465SRR5643513five period of Gastrodia elata13.040
SRR5643514five period of Gastrodia elata8.520
SRR5643515five period of Gastrodia elata13.330
SRR5643524five period of Gastrodia elata9.940
SRR5643525five period of Gastrodia elata13.110
SRR5643528five period of Gastrodia elata14.270
SRR5643658five period of Gastrodia elata12.980
SRR5643659five period of Gastrodia elata15.570
SRR5643660five period of Gastrodia elata16.760
SRR5643661five period of Gastrodia elata18.030
SRR5643662five period of Gastrodia elata15.250
SRR5643663five period of Gastrodia elata15.020
SRR5643664five period of Gastrodia elata17.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.970
SRR6049655Rhizomagastrodiae_C368-T10_good_19.780
SRR6049656Rhizomagastrodiae_C368-T07_good_114.660
SRR6049657Rhizomagastrodiae_C368-T07_good_116.750
SRR6049658Rhizomagastrodiae_C368-T04_good_121.840
SRR6049659Rhizomagastrodiae_C368-T04_good_120.160
SRR6049660Rhizomagastrodiae_C368-T01_good_116.300
SRR6049661Rhizomagastrodiae_C368-T04_good_117.400
SRR6049662Rhizomagastrodiae_C368-T01_good_114.280
SRR6049663Rhizomagastrodiae_C368-T01_good_118.220
SRR6049664Rhizomagastrodiae_C368-T10_good_115.030
SRR6049665Rhizomagastrodiae_C368-T10_good_115.030
SRP279888GastroGastrodia elata tuber 11.44
JuvenJuvenile tuber11.93
Mother_GastroMother tuber of Gastrodia elata 19.75
Mother_JuvenMother tuber of Juvenile 14.49