Detail information of GWHGAAEX005692/evm.TU.scaffold_17.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-64 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672143795|ref|XP_008795782.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Phoenix dactylifera] |
| Swissprot | tr|C0LGQ5|GSO1_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) |
| trEMBL | tr|K3ZQ39|K3ZQ39_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si028719m} |
| TAIR | AT4G20140 | 0 | Leucine-rich repeat transmembrane protein kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 692344 | 696441 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005692
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 29 | 62 | 1.30E-07 |
| PF13516.5 | LRR_6 | 87 | 103 | 0.089 |
| PF13855.5 | LRR_8 | 212 | 270 | 9.30E-08 |
| PF13855.5 | LRR_8 | 404 | 463 | 1.40E-08 |
| PF13855.5 | LRR_8 | 595 | 654 | 5.30E-07 |
| PF13855.5 | LRR_8 | 767 | 821 | 2.90E-08 |
| PF00069.24 | Pkinase | 940 | 1206 | 8.10E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.870 |
| SRR2545915 | Juvenile tuber | 3.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.510 |
| SRR5643514 | five period of Gastrodia elata | 19.990 | |
| SRR5643515 | five period of Gastrodia elata | 9.080 | |
| SRR5643524 | five period of Gastrodia elata | 15.910 | |
| SRR5643525 | five period of Gastrodia elata | 2.260 | |
| SRR5643528 | five period of Gastrodia elata | 4.310 | |
| SRR5643658 | five period of Gastrodia elata | 5.250 | |
| SRR5643659 | five period of Gastrodia elata | 1.660 | |
| SRR5643660 | five period of Gastrodia elata | 1.760 | |
| SRR5643661 | five period of Gastrodia elata | 2.290 | |
| SRR5643662 | five period of Gastrodia elata | 1.540 | |
| SRR5643663 | five period of Gastrodia elata | 2.730 | |
| SRR5643664 | five period of Gastrodia elata | 1.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.83 |
| Juven | Juvenile tuber | 10.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.97 | |
| Mother_Juven | Mother tuber of Juvenile | 3.90 |