Detail information of GWHGAAEX005696/evm.TU.scaffold_17.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383766734|ref|YP_005445715.1| | 4.00E-31 | putative sirohydrochlorin cobaltochelatase [Phycisphaera mikurensis NBRC 102666] |
| nr | gi|695068205|ref|XP_009381038.1| | 1.02E-80 | PREDICTED: uncharacterized protein LOC103969271 isoform X1 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0RLJ4|M0RLJ4_MUSAM | 3.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P26200_001} |
| TAIR | AT1G50170 | 2.00E-69 | sirohydrochlorin ferrochelatase B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 736319 | 764699 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005696
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01903.16 | CbiX | 88 | 192 | 9.40E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03794 | sirB | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009236 | Biological Process | cobalamin biosynthetic process |
| GO:0016852 | Molecular Function | sirohydrochlorin cobaltochelatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.840 |
| SRR2545915 | Juvenile tuber | 47.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.720 |
| SRR5643514 | five period of Gastrodia elata | 29.080 | |
| SRR5643515 | five period of Gastrodia elata | 31.060 | |
| SRR5643524 | five period of Gastrodia elata | 32.730 | |
| SRR5643525 | five period of Gastrodia elata | 31.720 | |
| SRR5643528 | five period of Gastrodia elata | 44.470 | |
| SRR5643658 | five period of Gastrodia elata | 35.010 | |
| SRR5643659 | five period of Gastrodia elata | 37.490 | |
| SRR5643660 | five period of Gastrodia elata | 40.630 | |
| SRR5643661 | five period of Gastrodia elata | 39.550 | |
| SRR5643662 | five period of Gastrodia elata | 42.080 | |
| SRR5643663 | five period of Gastrodia elata | 41.340 | |
| SRR5643664 | five period of Gastrodia elata | 42.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.00 |
| Juven | Juvenile tuber | 53.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.52 | |
| Mother_Juven | Mother tuber of Juvenile | 50.09 |