Detail information of GWHGAAEX005698/evm.TU.scaffold_17.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 8.00E-46 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|743800430|ref|XP_010925933.1| | 0 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Elaeis guineensis] |
| Swissprot | tr|Q9M3B0|PME34_ARATH | 0 | Pectinesterase 34 |
| trEMBL | tr|A0FHC0|A0FHC0_LYCAU | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT3G49220 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 795041 | 797583 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005698
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 27 | 162 | 1.50E-24 |
| PF01095.18 | Pectinesterase | 202 | 511 | 3.50E-136 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.720 |
| SRR2545915 | Juvenile tuber | 44.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 214.720 |
| SRR5643514 | five period of Gastrodia elata | 192.210 | |
| SRR5643515 | five period of Gastrodia elata | 282.380 | |
| SRR5643524 | five period of Gastrodia elata | 119.150 | |
| SRR5643525 | five period of Gastrodia elata | 470.110 | |
| SRR5643528 | five period of Gastrodia elata | 143.430 | |
| SRR5643658 | five period of Gastrodia elata | 258.360 | |
| SRR5643659 | five period of Gastrodia elata | 207.130 | |
| SRR5643660 | five period of Gastrodia elata | 94.760 | |
| SRR5643661 | five period of Gastrodia elata | 163.820 | |
| SRR5643662 | five period of Gastrodia elata | 167.070 | |
| SRR5643663 | five period of Gastrodia elata | 151.660 | |
| SRR5643664 | five period of Gastrodia elata | 274.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 399.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 214.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 409.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 284.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 193.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 148.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 427.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 253.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 422.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 540.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 390.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 390.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 168.16 |
| Juven | Juvenile tuber | 65.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 52.09 | |
| Mother_Juven | Mother tuber of Juvenile | 19.22 |