Gene detail

Detail information of GWHGAAEX005699/evm.TU.scaffold_17.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|218562070\|ref\|YP_002343849.1\|	5.00E-07	ATP/GTP binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
KOG	KOG0446	0	Vacuolar sorting protein VPS1, dynamin, and related proteins
nr	gi\|743756681\|ref\|XP_010918171.1\|	0	PREDICTED: dynamin-related protein 5A [Elaeis guineensis]
Swissprot	tr\|Q39828\|SDL5A_SOYBN	0	Dynamin-related protein 5A
trEMBL	tr\|W1PVR2\|W1PVR2_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN14117.1}
TAIR	AT5G42080	0	dynamin-like protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	799923	840702	-

Transcript Sequence
>GWHTAAEX005699 GTCGATTTCACGCAATTTTTTTCAAAGACAAAATTTGCTTTATGAATGCAAAGACCATGGAGGGATGTTTCTGATTGAAGCAAAACGCTTTACTTTCCTCCCAGTCTCAGCGATTCCTTCACGTAGAAGGGGCCTGCAGTTCCGATCAGATCTCTATCACTTCCTGTTAGATAAGGGGTTTCATCCCTATCGCGGTACCTGATCTGATCCGATCCGATCCAACCCCTGAATTGGAGGTGCCATGGAAAGCTTGATCTCGCTAGTGAATCGGCTTCAGAGAGCTTGCACTGCCCTAGGAGACTACGGAGAGGAAAGTGCGCTGCCAACGTTGTGGGATTCGCTGCCTTCCATTGCTGTGGTGGGAGGACAGAGTTCAGGCAAGTCTTCAGTGTTGGAGAGCGTAGTTGGGAAAGACTTTTTACCTCGGGGATCAGGTATTGTCACTCGACGGCCTCTTGTGTTGCAACTTCATAGAATTGATGAAGGTCGAGAATACGCCGAGTTTCTTCATCTCCCACGGAAGAAGTTTACTGATTTTGCTGCTGTGAGGAAGGAGATTCAAGATGAAACTGATAGAGAGACTGGTCGTAGCAAACAAATTTCTAGTGTCCCAATACATTTGAGTATTTATTCTCCTAATGTTGTGAACTTGACTTTGATTGATCTTCCGGGACTTACCAAGGTGGCTGTTGAGGGTCAACCTGATAGTATTGTTGCAGATATAGAGAACATGGTTCGCTCATATATTGAAAAGCCAAACTGCATTATTCTGGCAATATCACCAGCAAATCAGGATCTCGCAACTTCTGATGCTATCAAAATTTCCCGTGAAATGGACCCTAAAGGAGAGAGAACTTTTGGAGTGCTAACTAAGATTGATCTTATGGATAAAGGCACTGATGCTGTTGATATATTGGAAGGAAAAGCATATCGCCTGCAATTTCCCTGGTTTGGTGTTGTCAATCGTTCCCAAGCTGATATCAATAAGAGTGTTGACATGATTGCTGCTCGGCGTAGAGAGCGGGAATATTTTTCTAGTTCCCCGGATTACAAACATCTTGCTCATAGAATGGGTTCTGAATATCTTGGAAAGATGCTTTCAAAACATTTGGAAACGGTTATCAAGTCTCGCATTCCTGGTTTACAATCACTTGTTAGCAAAACTATTGCTGAACTTGAAGCTGAACTTAGTCGGCTTGGTAAACCAGTTGCAACAGATGCTGGAGGTAAGCTATATATGATCGTGGAGATTTGTCGTGGGTTCGATCAGATATATAAAGAACATCTTGATGGCGTGCGGCCTGGTGGCGAAAGGATATATAATGTCTTTGATAACCAACTTCCAGCTGCTTTAAAGCGACTGCAGTTTGACAAGCAGCTATCAATGGACAATGTGAAAAAGCTAATAACTGAGGCAGACGGTTACCAACCTCACTTGATTGCTCCTGAGCAGGGATATCGTCGTCTCATTGAGTCCTCATTAGTTAGTATTAGAGGCCCAGCTGAGGCATCTGTCGATGCGGTACATGCCATCCTTAAAGAGCTTGTTAGCAAAGCTATTAGAGAGACTGTGGAGCTCAGGCAATATCCTAGCCTTCGTGTGGAGGTTGGGAATGCAGCTATTGATTCATTAGAGAGAATGCGAGAGGAAAGCAGGAAAGCAACTCTCAAGCTAGTAGACATGGAAAGCAGCTATCTTACTGTTGATTTCTTCCGGAAGCTTCCTCAAGATGTTGAGAAGGGCGGAAATCCAACCCACTCTATTTTTGACAGATACAACGATTCGTATCTCAGACGTATTGGAACTACTGTTCTATCTTATGTGAACATGGTGTGCTCGAGCCTGCGCAACTCCATCCCGAAATCCATTGTGTACTGTCAGGTGAGGGAGGCAAAGCGCTCCCTCCTTGATCACTTCTTCACTGAAATAGGGAAGAAAGAGGCGAAGGAGCTGTCGAATTTACTGAACGAGGATCCAGCTATCATGGAACGAAGAACTGCCCTCTCAAAGAGGCTCGAATTATACAGAAACGCTCAAGCCGAGATTGATTCCGTGGCTTGGGCCAAGTGATCCATCAAATGAACCCTCTCTTTTTATTATTCATATTCTTCGTTGCCTGCAGCTGAAACACCAATGGTAATGCCTCCTCTCCTCGTCGATTTCGGAGTAAAGGTCATTATTAGCTGCTACTATTTGCACTCTGGGTGCCCAATTTATGCAAGAAGAGCCATTTTCTGGGAGCTTATAGTGAACATGGTTGTATTGTATTGTGTTGAATAGCTCCATATCATAACTAACTTCTGATCACATATTTTGGATCTTTTCATGTAGTAGCAGAGGGCTATTATTTGGTCTTGAACATAATATAAGAAGTTTTATTATTACTTCTTAGAATCATACAGTTTGTTTTATTTTAATGAGATTAATAGACGTCACTGCCGAGATTATAA

Network for GWHGAAEX005699

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.22	Dynamin_N	37	212	2.90E-54
PF01031.19	Dynamin_M	221	489	4.20E-64
PF02212.17	GED	513	605	5.10E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0003924	Molecular Function	GTPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	140.170
SRP064423	SRR2545915	Juvenile tuber	94.270
SRP108465	SRR5643513	five period of Gastrodia elata	86.210
	SRR5643514	five period of Gastrodia elata	88.920
	SRR5643515	five period of Gastrodia elata	90.210
	SRR5643524	five period of Gastrodia elata	86.430
	SRR5643525	five period of Gastrodia elata	140.680
	SRR5643528	five period of Gastrodia elata	152.930
	SRR5643658	five period of Gastrodia elata	166.290
	SRR5643659	five period of Gastrodia elata	95.280
	SRR5643660	five period of Gastrodia elata	89.650
	SRR5643661	five period of Gastrodia elata	94.620
	SRR5643662	five period of Gastrodia elata	84.560
	SRR5643663	five period of Gastrodia elata	89.410
	SRR5643664	five period of Gastrodia elata	85.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	86.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	93.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	76.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	83.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	63.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	77.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	63.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	97.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	97.440
SRP279888	Gastro	Gastrodia elata tuber	69.26
	Juven	Juvenile tuber	117.16
	Mother_Gastro	Mother tuber of Gastrodia elata	73.76
	Mother_Juven	Mother tuber of Juvenile	94.30