Detail information of GWHGAAEX005708/evm.TU.scaffold_17.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2868 | 1.00E-117 | Decapping enzyme complex component DCP1 |
| nr | gi|743863444|ref|XP_010943793.1| | 4.39E-174 | PREDICTED: mRNA-decapping enzyme-like protein isoform X4 [Elaeis guineensis] |
| Swissprot | tr|Q9SJF3|DCP1_ARATH | 4.00E-118 | mRNA-decapping enzyme-like protein |
| trEMBL | tr|M0RFE6|M0RFE6_MUSAM | 4.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04690_001} |
| TAIR | AT1G08370 | 1.00E-117 | decapping 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 1060265 | 1094483 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005708
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06058.12 | DCP1 | 14 | 128 | 1.10E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12611 | DCP1B | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043085 | Biological Process | positive regulation of catalytic activity |
| GO:0000290 | Biological Process | deadenylation-dependent decapping of nuclear-transcribed mRNA |
| GO:0008047 | Molecular Function | enzyme activator activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 91.070 |
| SRR2545915 | Juvenile tuber | 56.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 75.000 |
| SRR5643514 | five period of Gastrodia elata | 70.370 | |
| SRR5643515 | five period of Gastrodia elata | 71.210 | |
| SRR5643524 | five period of Gastrodia elata | 67.370 | |
| SRR5643525 | five period of Gastrodia elata | 69.550 | |
| SRR5643528 | five period of Gastrodia elata | 57.220 | |
| SRR5643658 | five period of Gastrodia elata | 69.080 | |
| SRR5643659 | five period of Gastrodia elata | 97.100 | |
| SRR5643660 | five period of Gastrodia elata | 125.790 | |
| SRR5643661 | five period of Gastrodia elata | 128.670 | |
| SRR5643662 | five period of Gastrodia elata | 127.090 | |
| SRR5643663 | five period of Gastrodia elata | 145.990 | |
| SRR5643664 | five period of Gastrodia elata | 148.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 82.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 132.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 67.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 97.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 79.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 101.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 83.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 79.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 66.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 73.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 73.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 99.74 |
| Juven | Juvenile tuber | 91.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.64 | |
| Mother_Juven | Mother tuber of Juvenile | 55.21 |