Detail information of GWHGAAEX005712/evm.TU.scaffold_17.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21742.00E-50Leptin receptor gene-related protein
nrgi|242055717|ref|XP_002457004.1|1.43E-52hypothetical protein SORBIDRAFT_03g047050 [Sorghum bicolor]
Swissprottr|Q9AST6|VSP55_ARATH1.00E-23Vacuolar protein sorting-associated protein 55 homolog
trEMBLtr|C5XJA8|C5XJA8_SORBI5.00E-53Putative uncharacterized protein Sb03g047050 {ECO:0000313|EMBL:EES02124.1}
TAIRAT3G115302.00E-50Vacuolar protein sorting 55 (VPS55) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001812307831274260+
Transcript Sequence

Network for GWHGAAEX005712

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04133.13Vps556893.10E-19
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.380
SRR2545915Juvenile tuber37.710
SRP108465SRR5643513five period of Gastrodia elata66.690
SRR5643514five period of Gastrodia elata65.180
SRR5643515five period of Gastrodia elata65.190
SRR5643524five period of Gastrodia elata65.120
SRR5643525five period of Gastrodia elata104.090
SRR5643528five period of Gastrodia elata112.330
SRR5643658five period of Gastrodia elata172.680
SRR5643659five period of Gastrodia elata54.320
SRR5643660five period of Gastrodia elata63.850
SRR5643661five period of Gastrodia elata80.150
SRR5643662five period of Gastrodia elata67.510
SRR5643663five period of Gastrodia elata93.920
SRR5643664five period of Gastrodia elata72.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.530
SRR6049655Rhizomagastrodiae_C368-T10_good_199.340
SRR6049656Rhizomagastrodiae_C368-T07_good_171.640
SRR6049657Rhizomagastrodiae_C368-T07_good_152.900
SRR6049658Rhizomagastrodiae_C368-T04_good_129.750
SRR6049659Rhizomagastrodiae_C368-T04_good_145.960
SRR6049660Rhizomagastrodiae_C368-T01_good_153.000
SRR6049661Rhizomagastrodiae_C368-T04_good_139.950
SRR6049662Rhizomagastrodiae_C368-T01_good_159.190
SRR6049663Rhizomagastrodiae_C368-T01_good_157.860
SRR6049664Rhizomagastrodiae_C368-T10_good_1109.770
SRR6049665Rhizomagastrodiae_C368-T10_good_1109.770
SRP279888GastroGastrodia elata tuber 143.79
JuvenJuvenile tuber199.79
Mother_GastroMother tuber of Gastrodia elata 133.60
Mother_JuvenMother tuber of Juvenile 101.97