Detail information of GWHGAAEX005715/evm.TU.scaffold_17.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-19FOG: Predicted E3 ubiquitin ligase
nrgi|672174789|ref|XP_008807499.1|4.19E-77PREDICTED: RING-H2 finger protein ATL38-like [Phoenix dactylifera]
Swissprottr|Q8W571|ATL32_ARATH9.00E-20RING-H2 finger protein ATL32 (Precursor)
trEMBLtr|W1PZX1|W1PZX1_AMBTC3.00E-70Uncharacterized protein {ECO:0000313|EMBL:ERN13155.1}
TAIRAT4G400703.00E-19RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001813166901347843-
Transcript Sequence

Network for GWHGAAEX005715

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2841273.60E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.540
SRR2545915Juvenile tuber3.610
SRP108465SRR5643513five period of Gastrodia elata17.780
SRR5643514five period of Gastrodia elata22.670
SRR5643515five period of Gastrodia elata13.930
SRR5643524five period of Gastrodia elata16.270
SRR5643525five period of Gastrodia elata12.950
SRR5643528five period of Gastrodia elata7.920
SRR5643658five period of Gastrodia elata6.750
SRR5643659five period of Gastrodia elata5.970
SRR5643660five period of Gastrodia elata6.760
SRR5643661five period of Gastrodia elata12.580
SRR5643662five period of Gastrodia elata8.830
SRR5643663five period of Gastrodia elata9.640
SRR5643664five period of Gastrodia elata9.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.010
SRR6049655Rhizomagastrodiae_C368-T10_good_117.270
SRR6049656Rhizomagastrodiae_C368-T07_good_127.230
SRR6049657Rhizomagastrodiae_C368-T07_good_132.230
SRR6049658Rhizomagastrodiae_C368-T04_good_117.210
SRR6049659Rhizomagastrodiae_C368-T04_good_119.130
SRR6049660Rhizomagastrodiae_C368-T01_good_123.860
SRR6049661Rhizomagastrodiae_C368-T04_good_133.110
SRR6049662Rhizomagastrodiae_C368-T01_good_132.360
SRR6049663Rhizomagastrodiae_C368-T01_good_114.790
SRR6049664Rhizomagastrodiae_C368-T10_good_139.010
SRR6049665Rhizomagastrodiae_C368-T10_good_139.010
SRP279888GastroGastrodia elata tuber 9.31
JuvenJuvenile tuber41.01
Mother_GastroMother tuber of Gastrodia elata 7.43
Mother_JuvenMother tuber of Juvenile 11.08