Gene detail

Detail information of GWHGAAEX005720/evm.TU.scaffold_17.57

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|110637750\|ref\|YP_677957.1\|	glycogen branching protein [Cytophaga hutchinsonii ATCC 33406]
KOG	KOG0470	1,4-alpha-glucan branching enzyme/starch branching enzyme II
nr	gi\|695036853\|ref\|XP_009405898.1\|	PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q41058\|GLGB1_PEA	1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|M0T502\|M0T502_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P07530_001}
TAIR	AT5G03650	starch branching enzyme 2.2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	1504484	1588070	-

Transcript Sequence
>GWHTAAEX005720 AAATTATTACAAAATATTCTTTGTCCATTCCCGAGCTCATCTCACAGCTTCCTCAGTCGCTTTTCTGACTTGCAGCCGCAGGGTTTCAGCGGCGACCGCTATGTCTTTTGCGCTCGCTGGCGGCCGGTTACCCATTGTCAAGCCTCAGAAGGGTCCCGTCTCTAGTGAGCGACGGCGCGCGGGTGTTTCCTCACCCTTATGGAATAAGGGTTCCTTTTCTGGGAAAGCATGCAAGTTAAAATGCAGAAATGCCTCTAGTGACACTGATTCTGTGTCAACTTCTGCCTCAGCATCCAGCAAATTACCAGTCCCAGGAACACAAAGTGATTACTCTTCCTTGACTAAAAAAATAAATTGCAACCAGGAAGTTGGTTGTGACACTCAGGTATTTAACGAAGAAAATGTTTTCAATCAGGATAATGGTACCATTGATAGTTTAATGACAGCAAAGTCTTTAGAGCCAAGTAGTCAACTGAATGAGCATGAAATAACTAAGCAGTCATCTGTTCACATGGTTGATAAAAGCAACAATGCTATGGAGGAGAAAAGATGCATTCCTCTACCTGGAAGTGGACAAAGGATTTACGAAATTGACTCTTATTTGCAAAATCACCGAGCACATCTTGATTACAGATTTAATCAGTACAAGAAAATGCGTGAGCTGATTGATAAACGTGAAGGTGGTTTGGATGCATTTTCTCGTGGATATGAGATATTTGGCTTTAACAGATCCAAAACTGGTGTCACTTACAGAGAATGGGCTCCAGGAGCAACGTCAGCATCGCTGATAGGAGATTTTAACAACTGGAATCCCAAGGCAAATGTCATGACGAAGAACGAGTTTGGTGTGTGGGAATTATTTGTACCTAATAATGCAGATGGCTCATCACCTATTCCACACGGTTCACGTGTAAAGATTCGTATGAAGACACCATCAGGAAACAAGGATTCCATTCCTGCATGGATTAAGTTCTCTGTGCAAGCACCAGGCGAAATTCCATACAATGGGATATATTATGAGCCTCCTGAAGTGGAGAAGTATGTGTTCCAACATCCTCAGCCAAAACGTCCCAAGTCATTAAGAATTTATGAATCACATGTTGGTATGAGCAGCAAGGAACCGATGATCAACACATACGTTAACTTCAGAGATGATGTTCTGCCTCGGATTAAGAGGCTTGGGTACAATGCTGTACAGATAATGGCTATTCAGGAGCATTCATATTACTCAAGTTTTGGGTATCATGTAACCAATTTTTTTGCTCCTAGTAGTCGCTTTGGAACTCCTGAAGATCTCAAATCCTTGATAGACAGAGCTCATGAGCTTGGTCTAGTTGTTCTCATGGATATTGTGCACAGTCATGCATCCAAGAATACTCTTGATGGGTTAAATCAATTTGATGGTACGGACACTCACTATTTTCATGCTGGCTCACGTGGTTATCATTGGATGTGGGATTCTCGCCTCTTCAATTATGGAAATTGGGAGGTGCTAAGATTTCTTATCTCAAATGCAAGATGGTGGTTGGAGGAGTACAAATTTGATGGCTTTAGATTTGATGGTGTAACATCAATGTTGTACACTCATCATGGCTTGCAGGTGGGGTTTTCTGGAAACTACAAGGAGTACTTCGGCTTAGCAACCGATGTAGATGCTGTAGTTTATTTGATGCTTATGAATGATCTTATTCATGGGTTGTACTCTAAAGCTATTAACGTTGGTGAAGATGTCAGTGGAATGCCAACGTTCTGTATACCGGTTGAAGATGGAGGCATTGGATTTGATTACCGCCTTCATATGGCAGTTCCTGATAAATGGATCCAAATTCTTAAATTAAGAGATGAGGATTGGAAGATGGGAGATATCGTGCATTCATTGACAAATAGGAGATGGCTAGAGAAATGCATAGCATATGCTGAAAGCCATGATCAAGCTCTTGTTGGTGACAAGACAATTGCATTCTGGTTGATGGATAAAGATATGTACCACTTTATGGCTTTGGATGGACCAACAACACCACGAATTGATCGGGGAATTGCTTTGCACAAAATGATAAGGCTAGTTACAATGGGATTAGGTGGAGAAGGATATCTAAATTTCATGGGGAATGAATTTGGTCATGCAGAATGGATAGATTTTCCTAGAGGAGATCAACATTTACCAAATGGAAAATTTGTACGTGGGAATGACTACAGTTTTGATAAATGTCGTCGCAGATTTGATTTGGGAGATGCTGATTATTTAAGATACCGTGGATTGCAAGAATTTGATCAAGCAATGCAGCATCTTGAGGAAAACTATAGATTCATGATTTCAGAGCACCTGTATATATCACGGAAAAATGAAGAAGAAAAGATGATCATTTTTGAGCGCGGAGATGTTGTTTTTGTCTTCAATTTCCACTGGTCCAATAGCTATTTCAATTATAGAATTGGCTGCATAAAACCTGGAAAGTACAAGATTGTGCTAAATTCGGATGATAAGCTTTTTGGCGGGTTCAGCCAAATCGATCCTTCTTCGGAGTACTTCACCAGCGACGTCGGCCATGACGATAGGCCTCGCTCCTTCCAAGCTTATGTCCCAAGCAGAACAGCCCTTGTGTTCGCTCCTTCTGAAGATTGACTCCCCTCTATTATCTATGCAGCAGCAGCCTCTGCGTTTGTAGATTTCTGGAGCGCGCTGCTCATTTCTGCTAGCTTTCCAGAACGCGCTTTTTTTCCCTTTCCTTCCTGACTCTATCTTTTTTTTTTATTATTCTTGCCCCTTCATATTTTAAATGGACGAGTACTCGTTTTTATTTATGAATTAAATTATAATTAATATGTTTAGTTTTTATTAGTTAATCAAATTTTGATTTATGCCTTTAAATGCTGTGAAGCTCTGTTGTTGTCTTTTTCTTCATTTTCACTAGCCACACACGGCTTGGGCTATTATTTGGGCAGCAAACTATTCTCCTATTTAGTTATCTTGATGGCTGTGAATCCATTCGTGGTGGTGCTGTG

Network for GWHGAAEX005720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.17	CBM_48	239	321	4.80E-20
PF00128.23	Alpha-amylase	387	459	4.10E-12
PF02806.17	Alpha-amylase_C	776	870	3.00E-24

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	pathway	mapID
K00700	GBE1, glgB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0005978	Biological Process	glycogen biosynthetic process
GO:0003844	Molecular Function	1,4-alpha-glucan branching enzyme activity
GO:0003824	Molecular Function	catalytic activity
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043169	Molecular Function	cation binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.050
SRP064423	SRR2545915	Juvenile tuber	47.550
SRP108465	SRR5643513	five period of Gastrodia elata	63.250
	SRR5643514	five period of Gastrodia elata	68.640
	SRR5643515	five period of Gastrodia elata	73.010
	SRR5643524	five period of Gastrodia elata	66.540
	SRR5643525	five period of Gastrodia elata	25.200
	SRR5643528	five period of Gastrodia elata	23.140
	SRR5643658	five period of Gastrodia elata	18.920
	SRR5643659	five period of Gastrodia elata	43.890
	SRR5643660	five period of Gastrodia elata	38.190
	SRR5643661	five period of Gastrodia elata	39.910
	SRR5643662	five period of Gastrodia elata	100.090
	SRR5643663	five period of Gastrodia elata	59.220
	SRR5643664	five period of Gastrodia elata	30.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	74.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	80.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	83.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	69.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	117.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	76.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	76.510
SRP279888	Gastro	Gastrodia elata tuber	50.04
	Juven	Juvenile tuber	228.71
	Mother_Gastro	Mother tuber of Gastrodia elata	71.61
	Mother_Juven	Mother tuber of Juvenile	141.41