Gene detail

Detail information of GWHGAAEX005722/evm.TU.scaffold_17.64

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|434394159\|ref\|YP_007129106.1\|	neutral invertase [Gloeocapsa sp. PCC 7428]
nr	gi\|672109075\|ref\|XP_008788363.1\|	PREDICTED: alkaline/neutral invertase CINV1 [Phoenix dactylifera]
Swissprot	tr\|Q6H6N5\|NIN3_ORYSJ	Neutral/alkaline invertase 3, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|M0T7S5\|M0T7S5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P17270_001}
TAIR	AT5G22510	alkaline/neutral invertase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	1801180	1847684	+

Transcript Sequence
>GWHTAAEX005722 AAAAAAAAAAAAAGAAAGAGAAGTAAACTGCGGCACGCATTTTGGGAGAACTGTGCGATCTTTCCTCAGGCGACTCTCTTTGCTACCCTTATCCTCTAGCAATTTCGTTCTCCCGAAGCTCGGCTCCGCCAGAATAAGCGCCGGTGCCCCGCCTTCTCTTCGCTTGGCTGACGTGCTCGTCTCGCCGACGACTCGCCCGACGCGCTCGCTTCACTGACGCTTTCGCCCTACGCAGCTCCCCAGACGCAGAGGCTACAATTTCACACATGCCTTGAAAGAAGAGCATAGATAACTTAACAATCTCTGCAATTAGTTGAAGAGGAGCGAATGTGATTTAGATAAAGAAAGTAACATATCAATTCTCTCAAATGACAACCTATGTTACAGCCGAACGCAGAGCCGACGATACACCAATATTATGAATCTTTCTCCTTGAGGCATCATCAAAGATCTCTTGAATCAAGAGCGTCGCACATCAACTCTATTTTCAATTTTTCTAGTGCAGCCTTTCTCAGTTTAGGATTGCAGATTTGATATGCTGAAAATCTTATTTAGGTGGAATTAATAAAACTGAAGTCAAAGGCTGGTTGCTAGTTCAATTTTAATAACTATGGGAATACCAGACGTCACTCTACAAGGGATCCTTGGGACAGTTTCAAGTTCTGAGCCTTGTGCGTTTGCCAGCACAACACAGTTGATGACAACCTTGAACATTCAAGTGAAGTCCAAGCGGAGACTCTCATTTAATGTGAAATCACAATCATCTACCAGAATTGGTCAAAAAGTAATACTGATAAATGGGGCACAAGTAAAATCATTTCATGGAAAAGCAGAAAGGAACATGTCACAGTATTTGAAATGCAAATGTCAGCGCACTGATGCTATATCTAGAATTTCTAGCGATGATGGTAATGGTTCCTGGCTTAAAGTGCAGTCTGGTGCAAAAAGCCAGTTGCTTCATGAGGCTGCGGTCCAGAAGGCTTTGGGCATTGATTTGATTAAACAAGTGAGACATGGTAATGAAGAGATTGACTCTAACGATGAAAAATCTGCACTTACTGGAGCAACTAACCATGCACAAATGAAGAGGAAAGGGTCATCCATTGAAGATGAAGCTTTGCATCTCTTACAAGAATCTGTTGTGTACTACTGCGGTACTCCTGTTGGCACTATTGCAGCGAAGGTTCACACTGATGGCAATTCCCTAAATTATGACCAGGTCTTCATACGTGATTTCATTCCTTCTGGTATCGCATTTCTATTGAAAGGAGAGTATGATATTGTCCGCAACTTCATCCTACACACTCTTCAGTTACAGAGTTGGGAGAAAACCATGGACTGCCATAGTCCGGGCCAAGGACTGATGCCGGCCAGTTTCAAAGTTCGAACAGTTCCTCTTGATGGTGATGATTCTGCTACTGAGGAGGTACTGGATCCAGACTTCGGAGAGGCAGCCATAGGGCGTGTTGCCCCAGTTGATTCAGGATTATGGTGGATTATATTACTAAGAGCATATGGAAAATGTTCTGGGGATCTTTCGGTTCAGGAGAGAATTGATGTTCAGACAGGAATTAAGATGATCCTTAAACTTTGTCTGTCTGATGGTTTTGACATGTTTCCTACGTTATTGGTGACAGATGGCTCATGCATGATAGATAGACGCATGGGAATTCATGGTCATCCCCTTGAAATTCAGGCACTTTTCTATTCAGCTCTCTTATGCGCCCGGGAGATGCTTACTCCTGAAGATGGATCAGCAGATCTACTCCGAGCACTGAATAACAGGCTGATAGCACTGTCGTTTCACATTAGGGAATATTATTGGGTAGACTTGAAAAAATTAAATGAGATTTACCGTTACCAGACAGAGGAATATTCTTATGATGCAGTCAACAAATTCAACATCTATCCCGATCAGATCCCTCCATGGCTGGTGGATTGGATGCCCCGTAAAGGGGGTTATTTGATCGGAAATTTGCAGCCAGCTCACATGGATTTTCGTTTCTTTTCTTTGGGGAATCTGTGGTCTATTGTAAGCAGTTTGACTACAGCACAACAATCACTAGCCATTTTGGATTTCATAGAGGATAAATGGTCTGATCTAGTGGCAGATATGCCTTTAAAGATATGCTATCCTGCGCTGGAGGGGCAGGAATGGAGAATCATCACAGGCTGTGACCCGAAAAACACATCATGGTCTTATCACAATGGTGGATCTTGGCCAACTTTGTTGTGGCAGCTCACCTTAGCGTGCATAAAAATGAAAAGGCCGGAGCTCGCTGCAAGAGCCGTGGAGGTCGCTGAGAAACGCCTCGCTGCAGACAAGTGGCCTGAATATTATGATACGAAGAGCGGGCGTTTCATCGGAAAGCAGTCCCGTCTGTACCAAACATGGTCAATTGCTGGTTTTCTCGTGGCGAAGCTGCTGCTCGCCAAACCGGATGCTGCTAAAATCCTCTGGAACGAAGAGGACGCCGATATAATCAGCGCATTCAATTTCATGACTGACTCCGGCAGCCCTCGTAGAAAGAGGGGGCGCAAGGCATTGAAGAAGACCTACATAGTGTGATCCTAAAGCCATACCTTTACGAAAGTAGGACTATAGGTGCATCATTTGTTATACGCTTGTATTTAATATTCTGTCTATCACCACATGTTGATATGGATTCTATCTGAAAATTTGTAGTTTAAAACTGGTAGGAAATTTGTTTACTGATCAATATCCTTCATAGTAAAGAATACAAAATTATTATTATGTGAATATAGTTCTGATTCAGCGTAGCCATTTTTCCTGTTTTATTCAATTGATTGTTCAATAAAGTTATTTGTCTTCCAAATAGCTTCCTTAAAAGCTAGAATATTAGGATGTGCATTTAAAATATGTAGAAAAGTG

Network for GWHGAAEX005722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12899.6	Glyco_hydro_100	170	610	3.10E-214

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH100

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0033926	Molecular Function	glycopeptide alpha-N-acetylgalactosaminidase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	69.260
SRP064423	SRR2545915	Juvenile tuber	45.400
SRP108465	SRR5643513	five period of Gastrodia elata	42.470
	SRR5643514	five period of Gastrodia elata	33.060
	SRR5643515	five period of Gastrodia elata	38.390
	SRR5643524	five period of Gastrodia elata	35.050
	SRR5643525	five period of Gastrodia elata	57.950
	SRR5643528	five period of Gastrodia elata	69.940
	SRR5643658	five period of Gastrodia elata	86.840
	SRR5643659	five period of Gastrodia elata	38.210
	SRR5643660	five period of Gastrodia elata	47.160
	SRR5643661	five period of Gastrodia elata	37.640
	SRR5643662	five period of Gastrodia elata	55.940
	SRR5643663	five period of Gastrodia elata	50.530
	SRR5643664	five period of Gastrodia elata	66.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	91.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	100.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	129.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	83.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	95.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.380
SRP279888	Gastro	Gastrodia elata tuber	65.87
	Juven	Juvenile tuber	51.51
	Mother_Gastro	Mother tuber of Gastrodia elata	72.74
	Mother_Juven	Mother tuber of Juvenile	69.78