Gene detail

Detail information of GWHGAAEX005733/evm.TU.scaffold_17.78

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|479128130\|ref\|YP_005068090.1\|	5.00E-34	ABC transporter ATP-binding protein [Arthrospira platensis NIES-39]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|672109699\|ref\|XP_008791552.1\|	0	PREDICTED: pleiotropic drug resistance protein 12-like [Phoenix dactylifera]
Swissprot	tr\|Q5Z9S8\|PDR12_ORYSJ	0	Pleiotropic drug resistance protein 12
trEMBL	tr\|I1Q309\|I1Q309_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA06G0152200.1}
TAIR	AT3G16340	0	pleiotropic drug resistance 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	2450774	2478245	-

Transcript Sequence
>GWHTAAEX005733 GGAGAGCTGAGATGCTCAAAGCATATGGCCCAGCAAGACACGCTGAGTGGATGGAGTTCAAAAAGGGACTCCTCGTCGGCCGCCGACGAGGAGGCGGCGGTACGGTGGGCGGCACTGGAAAGCCTCTCGGGCAATTTTGAAGCCGGCATCGCAGCCGAAGCGGGCCTGAGGCAAAAACATGGTGTCTGCGCGGACCTTTCCAGATTGAGGCTCGCGGAGCATCGCCTTTTACTTGATGATATCCTTAAAACGGCTGGCAATGAGGACAATACTGCTTTACTCAAAAAGCTGCGCAGGCGCATTGACAGGGTTGGCATTCAACTTCCAACTACAGAAATTAAGTTTGAGAATGTAACTGTGGAGGCAAAGTGCTATGTGGGCTCTAGAGCTATGCCCACTCTTTTTAATGAGTTAAAAAATATAGTTGAATTTATTTTTGGTTTGGTAGGCATGCGATTTTCTAAAATGGATACACTCAATATACTAAAAAATGTCTCAGGGATCATAAGGCCATCAAGAATGACATTATTATTAGGACCTCTATCTTCTGGTAAAACTACATTTTTGCTCGCACTTGCTGGAAAGCTTGATCCATCCTTGAAGATGGGTGGAGACATAACATATAATGGATATAAATTATCAGAATTTGTACCTCAGAAGACATCAACATACATTAGCCAAAATGATGTGCACATAGCTGAAATGACTGTGAAGGAGACTTTAAACTTCTCTGCCAAATGTCAAGGGGTGGGCGATCGTTATGAGCTTCTGAGCGAGCTGGTTCGAAGGGAGAAAGCTCAAGGAATAGAGCCTGAGCCTGAGGTGGATCTGTTCATGACGGCAACTTCAACGGAAGGAGTGCAAAATCATATCCAAACAGAATACACTCTAAGAATTTTAGGATTGGATAAATGTGCTGATACAGTGATAGGCAACCAAATGCTGAGAGGCGTATCAGGCGGGCAAAGGAAGCGTGTTACTACAGGAGAAATGATCGTCGGGCCAACAAAGACATTATTCATGGATGAGATATCGACAGGGCTGGACAGCTCAACGACATACAATGTGGTGAAGTGCCTGCAACAAGTTGTGGGTTTAGGGGAAGCCACAATTGTCATGTCTTTACTTCAGCCCACCCCTGAGACATTTGACCTTTTCGACGACATAGTTCTGCTATCCGAAGGTCAAATCCTCTACCAAGGCTCCCACAAGCATATCCTTCCCTTCTTTGAAAGCTGTGGCTTCAAATGTCCCCAAAGAAAGGCTGTTGCTAATTTCCTTCAGGAGATCACATCAAAGAATGATCAAAAGCATTATTGGGCAGATGAGAGTAAAGCCTATCAATTCGTGTCGGCTGCTGAATTCTCCAACTGCTTCAAGCAATTCCATCTCGGCAAGCATATGCAGAGGCATGTTTCCAAGCCTTTCGACAAGGCGAAAGGCCACAGAGCAGCATTGGTATTTACCAAGAGATCAGCGTCCCTCAAACAGCTCCTCCAAGCATCCTTCAATAGAGAATGGATTCTCATCAAGAGAAATGTCTTCTTGTACCTTTCTAGAGCAATCCAGCTAGCAATTATGGCATTGGTCACTGCCACCGTTTTCCTGAGAACAAAAATGGGGACGAGGACTGAAACAGATGAAGCAATTTACATTGGAGCAATCGGTTATGGCTTAACTGTCAGCCTGTCATATTGTTTTTCAGAGCAGGCTCTTGCTATATATAGGCTGCCTGTATTCTACAAGCAAAGGGACCTCTTACTCTATCCGACCTGGGTCTTCACATTACCTAACTGCATTATCAAGATTCCCATATCCCTCATGGAGTCTGCTATCTGGGTGATTGTGACTTACTACTCCATAGGTTTTGCCCCTGAACCTACCAGGTTCTTCAAACAGTTCCTACTTTTATTTGTGTTCCGGGAGACAGGAGGAGCCATGTTCAAAGCTATTGCCGGACTAGGCAGATCAATGATTGTTTCTAGTACTTGCGGATGCATTGTTTGTGTCATTGTGATCTCTCTCGGCGGCTTTATTGTACCCAAAGCACTATTGCCCAAATGGTGGATCTGGGGTTACTGGCTGTCCCCTATGAAGCACGCTTTTACTGCTCTTGCAGTCAATGAGATGCTGTCTCCTAGGTGGATGAATGAACTTGCAGCAGATGGCAGGAAACTAGGGATAGCAATCTTGGAAAGCATTAATGTTACAACTGATGAGTGCTGGTATTGGAAATCAATTCTTGTTCTTCTGGGATATGCTGTTCTTTTTAATGTACTTTTCACATTATTCCTAGCATATCTAAACCGTAAGTTTCTGGATTATTTGACTGTAACTAAGTCATTACCTATAGTTAATGCCATGTTTTTCTACTTAATTTGCCATTTAGCAGCTCTAGGAAAGCCTAAACCAGTAATATCAAAAGAAGCAGCAACGGACATGAAAAGCAGACGATCCTCATCTACAAAAAATGAAAACAAACTCAAAAGTTGTAGCGAATGCATTGTAACAAACAAAAAAGAGGCCAGAAATAATACCTCAGCAGAGAGAATGTCTCTCCCTTTCACACCCCTCGCCATATCTTTTAAAGAAGTCAATTACTACATCAGCATGCCTCCAGAATTAAAAGAGCAAGGAGTTAAAGAGACGAGACTTCAACTGTTAAAAGGTATCAGTGGGGCATTTCGGCCAGGTACTATCACTGCTCTCATGGGCGAGAGTGGAGCCGGAAAGACAACACTAATGGATGTCTTGGCCGGAAGGAAAACTTCTGGCTACATTGAAGGTGATATCAGAATAGCGGGATACCCAAAGAAACATACAACATTTGCAAGAGTTTCAGGTTATTGCGAGCAGTTTGATGTTCACTCTTCTCAGCTTACGGTCACAGAATCACTGATTTTTTCTGCATTACTTCGCCTACCTAAAGAAGTCAACTTGCAAGATAAATATAGATTTTTAAACGAAGTAATGGAGCTGGTGGAACTTGATAACATTAAGGGAGCATTGGTGGGTATTCCTGGAATCAATGGTTTATCTATAGAGCAAAGGAAGAGGTTGACAATAGCAGTTGAGCTTGTTGCAAACCCTTCAATCGTATTCATGGATGAGCCTACATCTGGTCTTGATGCAAGGGCGGCTGCCATTGTTATGAGAACTGTGAGAAACATTGCTAACAGCGGAAGAACAGTTGTTTGTACGATCCACCAACCCAGTATTGACATATTTGAGTCGTTCGATGAGCTGCTTCTTATGAAAAGAGGGGGACAAATAACATACTCGGGACCATTGGGTGAAAACTCTCAAGAGTTGATTAAATATTTTGAGGAAATTCCTGGAGTAAAGAAGATCGATCAAAGAAACCCCGCAGAATGGGTAATTGAAGAAAGTTCTATTGCAACAGAAGCCAGACTAGGGCTTGATTTTGCTAAAATATACTCTTCTTCATTTCAGAACAAGCGCAATATGCAATTGGTTAGAGAGTTAAGTAAACCTGTGTCAGGTTCAAGTGATCTCTACTTCCCAACACAGTATCCCCAATCTAGCTTACATCAGCTCAAATTGTTCTTATGGAAGTACCGTTCCATGTATTGGAGAAACCCAGATTACAATCTCTCAAGATTCAGTATGTCATTAATCATAGCTTTGCTGACAGGCATCTTTTTCTGGAAAATTGGCCAGCACAGGGACACTTTAGGGGACCTTACTTCTATCATTGGAACAATGTACCTTGCGTTACTATTTATTGGCTTTGGCAATCGCTCCACTGTGCAGCCATTCACTGCAAGCGAGCGGCTAGTATTTTATCGTGAGAAAGCATCAGAGATGTACTCAGCCTTTCCTTATGCTCTCTCTCAGGTGATCATCGAATTACCGTATGTGTTCTTCCAATCATTGTACTCCGTGCCCATACTGTACTCCATGATGAGCCTCCAATGGACTACAATGAAATTCACATGGCTCTTCATCATCTTCTTTCTCACAATCCTATGCTTCACATATTTGGGGATGTTATGCGTCGCGCTCTCTCCGAACATGCAAGTGGCTGCGATCTTGGCCAACTCATTCTTTTTGCTGTTCCATCTTTTCGCCGGTTTCTACATCCCGAGACCAGCGCTTCCAAAATGGTGGGGCTGGTACTACTGGCTGAACCCCGTATCATGGGCACTGTATGGGTTTATCATAACGCAGTACGGCGACATGCGCGACATGATAAAAGTTCCAGGGCAGGAAGACCAGCAAATCAGAGACGTCATTCTGAGCCATTACGGGTACAAGGAGGGCTACACCATTGCTGTCATTGCCGCTCTCCTGGCCTTTGCCAGTCTCTTTGCCTTCATGTACTGTCTATGCATCCGAATGCTGAATTTTCAGAGGCGGTAGGCGGCGAAGAGGCGCTTTTTAAAGGAAGGAACAATAGGGACGATTATACAAAAAAGTGTAGAAGGTCTTCAATCGATGTCGCGATGCTGATCATCTGGAATGAAGGGCTTATGCGAGAATAGTGCAATAAAAAATGTCATAATTTCTTTGATTAGGGATGAGAGAATTTAAAGTGCTTCCAAATAAATTTATTAATCTCATTGCCAATGTAAGTGTAAATTAAATCATCATTAATAAAGTAGCACAAGCATTTCAAAGTCATATA

Network for GWHGAAEX005733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	78	128	2.40E-09
PF00005.26	ABC_tran	154	336	2.60E-13
PF01061.23	ABC2_membrane	490	701	1.90E-36
PF08370.10	PDR_assoc	707	761	2.90E-16
PF00005.26	ABC_tran	880	1032	1.30E-19
PF01061.23	ABC2_membrane	1177	1390	1.20E-46

Protein Sequence

>GWHPAAEX005733
MAQQDTLSGWSSKRDSSSAADEEAAVRWAALESLSGNFEAGIAAEAGLRQKHGVCADLSRLRLAEHRLLLDDILKTAGNEDNTALLKKLRRRIDRVGIQLPTTEIKFENVTVEAKCYVGSRAMPTLFNELKNIVEFIFGLVGMRFSKMDTLNILKNVSGIIRPSRMTLLLGPLSSGKTTFLLALAGKLDPSLKMGGDITYNGYKLSEFVPQKTSTYISQNDVHIAEMTVKETLNFSAKCQGVGDRYELLSELVRREKAQGIEPEPEVDLFMTATSTEGVQNHIQTEYTLRILGLDKCADTVIGNQMLRGVSGGQRKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYNVVKCLQQVVGLGEATIVMSLLQPTPETFDLFDDIVLLSEGQILYQGSHKHILPFFESCGFKCPQRKAVANFLQEITSKNDQKHYWADESKAYQFVSAAEFSNCFKQFHLGKHMQRHVSKPFDKAKGHRAALVFTKRSASLKQLLQASFNREWILIKRNVFLYLSRAIQLAIMALVTATVFLRTKMGTRTETDEAIYIGAIGYGLTVSLSYCFSEQALAIYRLPVFYKQRDLLLYPTWVFTLPNCIIKIPISLMESAIWVIVTYYSIGFAPEPTRFFKQFLLLFVFRETGGAMFKAIAGLGRSMIVSSTCGCIVCVIVISLGGFIVPKALLPKWWIWGYWLSPMKHAFTALAVNEMLSPRWMNELAADGRKLGIAILESINVTTDECWYWKSILVLLGYAVLFNVLFTLFLAYLNRKFLDYLTVTKSLPIVNAMFFYLICHLAALGKPKPVISKEAATDMKSRRSSSTKNENKLKSCSECIVTNKKEARNNTSAERMSLPFTPLAISFKEVNYYISMPPELKEQGVKETRLQLLKGISGAFRPGTITALMGESGAGKTTLMDVLAGRKTSGYIEGDIRIAGYPKKHTTFARVSGYCEQFDVHSSQLTVTESLIFSALLRLPKEVNLQDKYRFLNEVMELVELDNIKGALVGIPGINGLSIEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIANSGRTVVCTIHQPSIDIFESFDELLLMKRGGQITYSGPLGENSQELIKYFEEIPGVKKIDQRNPAEWVIEESSIATEARLGLDFAKIYSSSFQNKRNMQLVRELSKPVSGSSDLYFPTQYPQSSLHQLKLFLWKYRSMYWRNPDYNLSRFSMSLIIALLTGIFFWKIGQHRDTLGDLTSIIGTMYLALLFIGFGNRSTVQPFTASERLVFYREKASEMYSAFPYALSQVIIELPYVFFQSLYSVPILYSMMSLQWTTMKFTWLFIIFFLTILCFTYLGMLCVALSPNMQVAAILANSFFLLFHLFAGFYIPRPALPKWWGWYYWLNPVSWALYGFIITQYGDMRDMIKVPGQEDQQIRDVILSHYGYKEGYTIAVIAALLAFASLFAFMYCLCIRMLNFQRR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.060
SRP064423	SRR2545915	Juvenile tuber	1.580
SRP108465	SRR5643513	five period of Gastrodia elata	7.260
	SRR5643514	five period of Gastrodia elata	4.280
	SRR5643515	five period of Gastrodia elata	4.350
	SRR5643524	five period of Gastrodia elata	3.770
	SRR5643525	five period of Gastrodia elata	4.740
	SRR5643528	five period of Gastrodia elata	3.570
	SRR5643658	five period of Gastrodia elata	4.860
	SRR5643659	five period of Gastrodia elata	1.470
	SRR5643660	five period of Gastrodia elata	1.470
	SRR5643661	five period of Gastrodia elata	1.290
	SRR5643662	five period of Gastrodia elata	1.330
	SRR5643663	five period of Gastrodia elata	2.430
	SRR5643664	five period of Gastrodia elata	1.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.450
SRP279888	Gastro	Gastrodia elata tuber	1.34
	Juven	Juvenile tuber	1.80
	Mother_Gastro	Mother tuber of Gastrodia elata	1.92
	Mother_Juven	Mother tuber of Juvenile	2.04