Gene detail

Detail information of GWHGAAEX005737/evm.TU.scaffold_17.83

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392373939\|ref\|YP_003205772.1\|	2.00E-06	Alpha/beta hydrolase fold [Candidatus Methylomirabilis oxyfera]
KOG	KOG2931	0	Differentiation-related gene 1 protein (NDR1 protein), related proteins
nr	gi\|720019808\|ref\|XP_010262203.1\|	0	PREDICTED: pollen-specific protein SF21-like [Nelumbo nucifera]
Swissprot	tr\|O23969\|SF21_HELAN	8.00E-162	Pollen-specific protein SF21
trEMBL	tr\|B9N5G7\|B9N5G7_POPTR	0	Ndr family protein {ECO:0000313\|EMBL:ERP49778.1}
TAIR	AT5G56750	0	N-MYC downregulated-like 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	2603817	2610515	+

Transcript Sequence
>GWHTAAEX005737 GCAGAAATCCGTCAATTGACTCTCCCAAGCTGTCGGCCGATAACCGTTCGGCTATGGTCACCCGTTTGAATGGGTCCCACTGACTGCCAGCTGGAGGATTGCAAGATAAGTCGAAATGGCCGAAGGGCCGAAGGGCCGACGGGTGTCGGTGGGATTAACCTAACCTCACCCGCGTATAAATGGCAGGAGGTAGGAGAGGAAGAAGATAGGTAGGCCGGGAGGGAAAGAGACGGATCAGCAAGAGAAAGAAGAGTGGCTTCGGAGTTCAGCCGCCGATGGGGGAATCAAGCAGTTCCGTATCCATTGACGTGGAGAGAATCTCGTTTGGTGGAAAGGAACACCTTATACCAACAAGATGCGGTTCTGTTTCAGTTTCCGTTTTTGGCGATCAGGAAAAGCCTGCTCTTGTTACTTATCCTGATGTAGCGTTAAACTATATGTCGTGCTTTCAAGGATTGTTTTTTTCACCAGAGGCTGCTTCATTACTGCTTCACAATTTTTGCATATATCATATCAGCCCTCCTGGACATGAGTTCGGAGCTGCTCCTATTTCTCCCGACATTCCGGTGCCCTCTGTTATTGAGTTGGCAGATCAAGTTGCTGACGTTCTTGATTTCTTCGGGCTAGCAGCTGTGATGTGCATGGGCGTCACTGCTGGTGCTTATATCCTTACACTCTTTGCCCTGAGATATCGAAACCGAGTTCTGGGCCTGATGCTGGTGTCGCCATTATGCAAAGCTCCTTCCTGGTCCGAATGGTTCTTCAACAAGGTGATGGCCAATCTGCTGCACTTTTACGGGATGTGCGGGCTGATAAAAGATAGCTTGATTCAGAGATACTTCAGTAAGGAGGTCTGCGGCAGCGGTCAGCACCCAGAATCGGATATTGTTCGTGCCTGCCGAAGCCTGCTGGACGAAAGGCAGGCCGTGAACGTGTGCCGGTTTGTTGAATCAATGAACGGGAGGCAGGACTTGTCGGAAGAGGTGAGGAAGCTGCGGTGCAGGATGCTGATATTCGTGGGCGAGAGGTCTCCGTTCCATGGGGAGGCGGTGGACATGGCTTCGAAGCTGGACAGGAGATTCAGCGCTCTCGTGGAGGTGCAGGCTTGCGGGTCGGTTGTGACTGAGGAGCAGCCGCACGCGATGGTGATTCCGATGGAGTATTTCCTGATGGGTTACGGGCTTTACAGGCCGTGCCAGATGAGCGGCAGCCCTCGCAGCCCTCTCAGCCCCTCCTGCGCCTGGCCCGACCAGTTCTCCCCCGAGAGTATGGGCCTCAACCTCAAACCCATCAAAACCAAAATCCAGCCTTGATCCCCTTCCCACCCCTCTGTAGATGCGCCATCAAAGGAGATTCTTTTTTTTTCTTTTTCATTTCATTGTGGTGGCCCACTGATCGCTGTTTTTTTTCCTTATTTTTTTTTTCATATCGTATAAATAAAGAGAGGTTCGATATATAGGGTATAGGCGATCAATGATTAGCTGCTGCAGCTGTGGAATATTTGTTATTTCATAATAATCATTGATTCGAGGAAGTTAATAAATCCACTTCGGTGATGGTCGTTTTGGTTTATTGATTGGTTTCTTTGGCCTGTTCGCATTCTAAGTTGAAAGACTTCTGGTGCTATCATCAGAAATATAAATTTTAAATGTCGGTGAGTTAGGCCAAAAAGAATATAAATAAAATAGTTTATTATTATAAATGAATTAAGAAAAATAAAATTAGGTCACTATAATAACTACCACTGCCTCTCTGCTCCTCTTTGCGGTGCCCGAACTTCTCGCCACAGCTTGCCCCCTCTGTCATCACTACAAACCTCTCCTTCGCAGCTCTGCTCGCCGTTGCTTTCCTCAGCGAACAAGCTTCAGTGCTTCCCTCTCATGTCATCTTCTTTTATTACAGTTGCACTTTGAATTTCTCTTAGCATTCAAACATGATTGATATGTAGATACCAACATAGCTGGGAAAAGATCAGTTTGCTTCTCACCTATGTTGTTCATCATACCGACAAACTAACATTCATTTTCGACGATGATTTCTAAACTTTCATTTTTTCAATAGTAGACTTATATGCTAAATTGCCAATTAATTTGCCTGCGTTTGCTTCCATGATTAGTTGTATGCACTTTATTATTTTCTTTTTGTATTTGTTTTGATTTTTACAATTAATTTTATATTTTACTCAAATTATCTTAGATTGTAATATTTCAATTTGGTTATACTACAACCATGAGTGTACCACCCACAAATACTTGCATGAACAATGATGGCATTGTTAATGAGCCCAATATTTAAGAATACAATTCGCAAGTTAATGACATCATTGAACTTACAATAACTCTCAGTGCAGCCCTTCTTGATTGATGAAGCCTTTCAATTATTATAAAGGCATACACTTGTGGCACTGGGTTGGCCTAAAAACGAAATCAACTTATAATTACATGAAACCATATATAGGTGCTTTTTTCTTGTTGTAAAAAAGGAAAAGTATCTAATGCCCCTATCAAACTCAAAATAATGTAAAAATTAATTATTAAAATTTGATGCAGGCTATAATGGTTGTGCTCGATTCTTTCCACAATAGCAGACATGTTGTACATGATACTGATCTTGAACATAACAATGAGCAAAATCATGAGATCTTTGTATCAAAGCAAAATTAGTTCC

Network for GWHGAAEX005737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03096.13	Ndr	21	305	1.20E-106

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.410
SRP064423	SRR2545915	Juvenile tuber	30.420
SRP108465	SRR5643513	five period of Gastrodia elata	45.370
	SRR5643514	five period of Gastrodia elata	34.350
	SRR5643515	five period of Gastrodia elata	66.910
	SRR5643524	five period of Gastrodia elata	40.330
	SRR5643525	five period of Gastrodia elata	61.630
	SRR5643528	five period of Gastrodia elata	56.260
	SRR5643658	five period of Gastrodia elata	81.000
	SRR5643659	five period of Gastrodia elata	54.550
	SRR5643660	five period of Gastrodia elata	48.950
	SRR5643661	five period of Gastrodia elata	75.710
	SRR5643662	five period of Gastrodia elata	54.900
	SRR5643663	five period of Gastrodia elata	63.600
	SRR5643664	five period of Gastrodia elata	55.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.910
SRP279888	Gastro	Gastrodia elata tuber	60.27
	Juven	Juvenile tuber	26.51
	Mother_Gastro	Mother tuber of Gastrodia elata	56.97
	Mother_Juven	Mother tuber of Juvenile	50.15