Gene detail

Detail information of GWHGAAEX005738/evm.TU.scaffold_17.84

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|114320431\|ref\|YP_742114.1\|	1.00E-28	C4-dicarboxylate transporter/malic acid transport protein [Alkalilimnicola ehrlichii MLHE-1]
nr	gi\|672164330\|ref\|XP_008802038.1\|	0	PREDICTED: S-type anion channel SLAH2-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9FLV9\|SLAH3_ARATH	4.00E-169	S-type anion channel SLAH3
trEMBL	tr\|E0CUQ2\|E0CUQ2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22602.3}
TAIR	AT5G24030	1.00E-168	SLAC1 homologue 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	2614395	2618227	-

Transcript Sequence
>GWHTAAEX005738 CACCCACCATAAGCCATTAAAGTTCGAACTTGCTCTTTGCTTCTTCTTTGCAGCCATTGCTAAGCCTCTTTAGAGTTTCAGATCCGTCGGCGGTTGAAGATTGGATAGGCGGGGAGGATCTGGCTAGAGTGTTCACAGTCGAACAGTTTCTGCCGGTAGTGAAGAAAGCTCATGTGAGATTTCACAGTCATGGCGGAGGCGGAGAACTATTCTGCTGTGAACTCTCCCTCTTCGGCCACGCCAGCCAACAGCATTCCTCTTTTTCTAAAACTTCAAGTGCACAAAATCAATCCTTAAAATGCATCTTATGACACATTCATGGCAAACATAGTATTTTTAATTAATTGATCTATGGAATGTAAAATTTGAGTAAAGTAAAATTTTTATATGAAATGTTTAAGAAAAAATTGCAAGTAAAAGTTATATCCCACTATAAAAGATCGGGCAAAATTCAATTTTACGCAGAGGATTAGCTCACGGTGAGATAAAGAAAACGATCTCGAGGAGGAACGCAGAGCTTCAACTGTGACTTCTGGTTCAAAGAGGAAGGAGACTAAAATGAAGGTCTTCATTCTGTCCGTTCGAAGACGCTCCATCGAAAGTCGTTCAAAGTGGAGCAGACAAAGAGGATGGAGGCGACGCCGAAGGTTCTTGATTTTCTCGTTCGAAGCTCCGCTTCGTCTCCGTTCGAACTACACACAAATCGTTTGAAGGTTGTTTAGGGTTTCGTATCCTTGTATATATGGGATTCAATCAGAGAATGTAGTTTTTTTATGTTTTTTTATGTATGGTATGTGAGATTTAAATCTCAAGAAAAGGCATGCTTGCATTTAATACAATTAAGAAATTATATATATTTACAATAACACATAACGGTAATCTTATATATTTTAGGAAAAGCTTAAGGGATATGTAGGAAGCTATATTGCAAAATTATAATAAATATAATATTTTATATTCCATTGCTCCATAAGGTATACTTTTGGTTCAACTCTTGAATCCTGAATCAATATATATGTATAATATATGAAAGCATGCAGATTTGGTGGCTTGTGGAAGTATGGGGCGTCGCTTGGCCATCAAAGATGGCTCTGATCATTCGAACTGCGTTTCTTCTCATCGTTTAGATGATCATACAATATATGAAGAATCGAATGAAGTAAGGCTGCCAGCGACACAATATACTGTTGATATTCCATCCCTGAATAGTGCTCCCATTCATACAAACGAAGTCAAAGAAAAGCAACAATCGAATGAGCATGATTGCTTCTCAAGCAGCAGAAGGGCGCCTAAAGATAGCTACTACAATACTTTCAAAACATACTCACGCAGATTCGAAAGCTCCGGACTAGAAAAAGCCGCAGATCCAGGGGAGTTTCCAACATTGAAACGCTACTTTGATGCCCTTGAAGGACCCGAACTAGAGAGCCTCAAGCCTTCGGAGAAGTTGCTTCTTCCTCAAGATGAGAAATGGCCTTTCCTTCTTCGCTTCACCATATCTTCTTTCGGAGTGTCTGTTGGATTCGGAATCCAAGCCCTGCTTTGGAAGACAATAGCCACGTCTCCTACCATGAGCTTTCTTCACATAAACTTAGCAGTGAACTACACTCTCTGGTGCATCTCCCTTTCATTGATGGTTTCTGCAGCCTTCATATACAGCTTAAAAATGATATATTACTTCGAAGCCGTGAGACGGGAGTTTCATCATCCTATCAGAGTTAACTTCTTCTTCACTCCATGGATAGGCTGCATCTTGTTGCTCCTGAGTTTGCCTCCTTCGATTGCCAGGAACTTGCATGATTCTTTATGGTACATAACAATGACTCCCATACTCTGTCTAGAGCTCAAAATCTACGGACAGTGGATGTTGGGAGGCGAGAGAAGGCTTTCCAAAGTGGCCAACCCATCAACTCATTTGTCAATTCTGGGAAACTTTACGGGCGCCATTCTTGGCTCTTCCATGGGGTTAAGGGAAGGGGCGATTTTCTTCTTTGCTGTTGGCTTAGCGCATTATGTTGTCCTGTTCGTGACTCTGTATCAAAGGCTTCCAACAAATGAGACACTGCCGAAGGATCTTCATCCTGTTTTCTTCTTGTTTATAGCTGTGCCGAGTTTGGGATGCATTTCATGGGCGATGATTGTTGGGCATTTCGACATTGGCTCCAAGATAGCTTATTTTATGGCCATGTTCCTCTACGGCTCTCTGGCTGCTCGTGTAAACTTTTTCCGAGGCTTTCGGTTCTCTCTTGCGTGGTGGGCTTATACAGTGCCAATGGCCGGTGCATCACTAGCAACTATTAGATACACTGCAGAAGTCAACAATCTCTTCATGAGGATCCTATCAGCGGCTCTCTCTGGGATATCTGCTTTCACATGTATAGCTTTGATCATCCTGACTATTGCTCATGCCTTTATTTTCCACACTCTCTTTCCAAATGACATTTCTATTGCTATTACTCTGAAGAGGGAAAACAAGAAGCTGAGCACCGATCAATTAGCTTGAGAGTTCGTAATCAAGATCGAGATATGCATTTAAAGGATCCATTTAGACTACATAGTTCGTTTGTCTATATCTCAATACATCCGCACACCAATATATTCGTCTTTCTAAGAAGATATGAGTTCTTCATGAGCAATACAGTTTGCTGTTTTTCGGGTCAAATAATCAACTATGCATCATCCTTGTTGCTCATGGATATGTTCTACACTAGTATGATTTTGATGTGATTATAATCTATAGTTGCATCATAATATGATTACTATTTGCGTTTGGCCTGAGGTTTTGCCAAGTAATAAATGGGTCGTAGGAAATTAGGTAATGAATATGTTATCTACAACGTTTATTTAATCAAGCATATATAGGCCCAAGAGCATATAAAGGAAATATAAAAGTAAGACACGGATCTATAGTGATTCGGCCCATGCAGTGATGTGTATGGTGGAGCCTTGAGTGCAGCACTAGGAGGTAGACCAAGATTGGGTACACTGGGACTGCTGGGATGTGAAGACTGATTCGATCAACACGAGAGATGCCGATCAGCACGAAGGTTGTCAAAAAAGTAAGAACAAAAGAAAAATGACGGTGCAATTTAAGTAATTAACTGAGCCGTTAAGGAATATATTAATTAAATAATATATTAATTATCGCATAA

Network for GWHGAAEX005738

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03595.16	SLAC1	143	447	1.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.860
SRP064423	SRR2545915	Juvenile tuber	3.010
SRP108465	SRR5643513	five period of Gastrodia elata	21.630
	SRR5643514	five period of Gastrodia elata	2.420
	SRR5643515	five period of Gastrodia elata	8.670
	SRR5643524	five period of Gastrodia elata	3.520
	SRR5643525	five period of Gastrodia elata	0.070
	SRR5643528	five period of Gastrodia elata	0.020
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.860
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.590
	SRR5643662	five period of Gastrodia elata	0.590
	SRR5643663	five period of Gastrodia elata	0.550
	SRR5643664	five period of Gastrodia elata	0.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.240
SRP279888	Gastro	Gastrodia elata tuber	0.76
	Juven	Juvenile tuber	0.37
	Mother_Gastro	Mother tuber of Gastrodia elata	0.99
	Mother_Juven	Mother tuber of Juvenile	4.44