Gene detail

Detail information of GWHGAAEX005741/evm.TU.scaffold_17.90

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672131201\|ref\|XP_008789159.1\|	PREDICTED: ethylene-overproduction protein 1 [Phoenix dactylifera]
Swissprot	tr\|O65020\|ETO1_ARATH	Ethylene-overproduction protein 1
trEMBL	tr\|M0TLU4\|M0TLU4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P01920_001}
TAIR	AT3G51770	tetratricopeptide repeat (TPR)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000018	2850275	2853428	+

Transcript Sequence
>GWHTAAEX005741 ATGCAGAACAATTTCTTAACGAGCATACGGAGCATGAGGCTGATCGACGGGTGCAAAGGAGCCCAGGTATGCGCGGTGAATCCCTCCTCCACCGTCGCCATAGCCGCAGAGAAGTTCGCCAGCCTCCGTCCAACCTTCTCCCTCCGCTCTAAATCCATCAGCCAGCAGCAGCAGCATCCCCCTAAAAACCAGAATCAGCAGCATCACCATCACACCCCTTCCCTCGATTCCCTCCTCTCCACCTTCGGCCTTCCTTCTCCAGATCTCATAGAACCAAGCATCGATGCTTTCCTCCGCCCCATCGAGTACGTCGACGCCCTCGCCACTTCGTTCCGATCCCTATCATCCGCTATCTCATCATCGGTTCCGTCCGCATCGCTGAGCGACATCTACCTCGAGCGTTTCTCTCTCTTCCAAGGCATTGGCGATCCAAAGCTGCTCCGCCGCGCCCTCCGATTGGCTCGTGTCCACTCCCCGGATATCCACCACAAGGTCGTCCTGTCAGCTTGGCTTCGATTCGAGCGAAGGGAGGACGAGCTCGAGCCTTTTACCTCCCCTGCCGCATGCTCTCCGACCTCTCCCTCGCTTGAATGCCCCCGTGCCGCCCTTTCCCTGGCATGCTCCTCTGACGGGATGCCTTCCAGTCCCTGCCCATGCCGCTGCACCTCCGATCCATCCGCATCCTCATCCGCTCCAGTTCTGCCTCCCGATCTCCTCGAAGTTGACATAGATCTATGGTTTTGCATAGGCGAGGAGGAGATCCCTTGCATCCGCTCCAACATCGCCGCCCTCTCCAGACCTCTATCCACCCTGCTATACGGCGGCTTCTCCGAAACACGCTGCGACCACATAAACTTCACTCACAACGGCATCTCCGCCCGCGCCATGCGCGCCGTCGAAGCCTTCAGTCGCGGAGGCTCCATCGATGATTACCCCCCGGATACCGTCCTCGAAACCCTTGCATTTGCCAATCGTTTCTGCTGCGAGGGCCTCAAGGCCGCCTGTGATTCGAAGCTCGCCTCCATCGTTCGCAACGTGAACGATGCTCTCTTCTTCATCGACTACGGGTTGGAAGAAGCGGCCTACCTACTCGTCGCCGCATGCCTCCAGATTTTCCTCCGCGGTCTTCCCGGCTCTCTGCAGAAATCGGAGATTAACTTGATATTCTGCACCCCTGAGGGCAGAGAGCAGCTGGCCATGGCCGGACACGCCTCATTTGCTCTTTACTACTTCCTTAGTCATGTGGCTATGGAGGAAGACATGAGATCAAACACTACGGTAATGCTTTCTGAGAGGATGACTGAATGTGCTGCTTCTGGATGGCAGAAGCAGCTCTCAATGCATCAGCTGGGTTGTGTAATGCTTGAGAGGGGGGAATGCAAGGACGCGCAGAAATGCTTTGAGGCGGCCGTTCAGGAAGGGCACGCTTACTCTCTTGTTGGTCTAGCTAGGGCAAAATACAATAAGGGACACAAGTACTCTGCCTATAAGCTCCTAAACTGTATGATCTCTGATTACCCCTCCTATGGCTGGATGTATCAGGAACGTTCATTATACTGCAATGGCAAGGAGAAAATGGCTGATTTGAACACCGCCACGGAGCTTGATTCGACTCTATCTTACCCCTACAAATGTAGGGCTGCGATACTAGCGGAGGAAAAACCCGGCGCAGCTGTTGCAGAAATCAACAAGGTCCTTGGATTCAAGGTTTCGACGGATTGTCTGGAGCTGCGGGCATGGCTGTATCTGGCTCTTGGCAATTATGACTTGGCTCTGCAGGATATCAGAGCAATCTTAACTTTGGATCCAGATTACTTGATGTTTAATGGGCAGATGCATGCGGAACAGCTTATTGATACCCTCCGGCAATACGTGCAACCGTGGGACATGGCTGATTGCTGGATGCAACTGTATGACCGTTGGTCTGCAGTAGATGATATCGGCTCCCTTGCTGTGGTTCACCAGATGCTGACAAAGGAGCCCGGAAACAGCGGCTTGCGATTTCGGCAATCTCTTCTCCTTCTAAGGTTGAATTCGCAGAAGGCCGCAATGCACAGCCTCCGGATGGCCCGAAACCATTCGACCAGCGAACACGAGAGGCTCATTTATGAAGGCTGGATTCTGTACGACACTGGGCATCGCAAAGAAGGGCTGGCCAAGGCTGAACAGTCCATCGCTCTCCAAAGATCCTTCGAAGCATTTTTCCTGAAAGCATACGCTTTGGCTGATACAAGCCTGGACCAGGCATCTTCCTTCCAAGTTATCCAGCTGCTAGAACAGGCTAATAGCTGCGCATCTGATAACCTCAGGAAAGGGCAGGCACATAACAATATGGGAAGCATTTATGTGGACTGCGACATGCTGGCTGAAGCTGCAGAATGCTATGTAAAGGCTCTGGGCATCAAGCACACGCGAGCTCATCAGGGTCTAGCTCGCGTCTACTATCTCAAGAACCAAAAGAAAGCTGCTTACGATGAGATGACAAAGCTGATCGAGAAGGCCAAAAGCAATGCTTCGGCATATGAAAAACGATCGGAGTATTGCGATCGCGACATGGCAAGAAGTGACCTCAATATGGCAACTAATCTGGACCCACTGAGGACCTATCCTTACCGATACAGGGCTGCAGTTCTGATGGATGATCACAAGGAAGAGGAAGCGATCGCGGAGCTGTCGAGGGCAATATCGTTCAAGCCGGAACTTCAGCTGCTTCACCTGCGCGCCGCCTTCCACGATTCAATGGGCAATGCTGCGGCCACTTTGCGAGACTGCGAGGCGGCGCTCTGCGTCGAGCCGGATCACGCCGACACCGTCGAGCTCTACAACAGGGCTCGCGCCCGAGCTGCGGAGCCACCGCTGAGCTTTGAAAACGATGTATCGATGAATCTGGGTGCATAG

Network for GWHGAAEX005741

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13181.5	TPR_8	577	605	0.015
PF13181.5	TPR_8	773	801	0.028

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.830
SRP064423	SRR2545915	Juvenile tuber	39.060
SRP108465	SRR5643513	five period of Gastrodia elata	27.160
	SRR5643514	five period of Gastrodia elata	25.960
	SRR5643515	five period of Gastrodia elata	25.430
	SRR5643524	five period of Gastrodia elata	31.780
	SRR5643525	five period of Gastrodia elata	29.350
	SRR5643528	five period of Gastrodia elata	15.850
	SRR5643658	five period of Gastrodia elata	33.500
	SRR5643659	five period of Gastrodia elata	35.500
	SRR5643660	five period of Gastrodia elata	33.720
	SRR5643661	five period of Gastrodia elata	37.950
	SRR5643662	five period of Gastrodia elata	30.100
	SRR5643663	five period of Gastrodia elata	27.990
	SRR5643664	five period of Gastrodia elata	25.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.140
SRP279888	Gastro	Gastrodia elata tuber	16.01
	Juven	Juvenile tuber	20.82
	Mother_Gastro	Mother tuber of Gastrodia elata	30.19
	Mother_Juven	Mother tuber of Juvenile	16.34