Detail information of GWHGAAEX005742/evm.TU.scaffold_17.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557694903|ref|YP_008797957.1| | 8.00E-22 | ubiquitin-activating enzyme E1-like protein [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG2012 | 0 | Ubiquitin activating enzyme UBA1 |
| nr | gi|672112279|ref|XP_008804921.1| | 0 | PREDICTED: ubiquitin-activating enzyme E1 1-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P20973|UBE11_WHEAT | 0 | Ubiquitin-activating enzyme E1 1 |
| trEMBL | tr|M0RMG4|M0RMG4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P29400_001} |
| TAIR | AT2G30110 | 0 | ubiquitin-activating enzyme 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 2854618 | 2879717 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005742
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00899.20 | ThiF | 127 | 499 | 6.90E-28 |
| PF16190.4 | E1_FCCH | 300 | 370 | 6.60E-26 |
| PF16191.4 | E1_4HB | 372 | 441 | 1.40E-20 |
| PF00899.20 | ThiF | 523 | 1025 | 1.40E-72 |
| PF10585.8 | UBA_e1_thiolCys | 711 | 965 | 3.70E-81 |
| PF09358.9 | E1_UFD | 1036 | 1125 | 1.90E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ThiF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03178 | UBE1, UBA1 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006464 | Biological Process | cellular protein modification process |
| GO:0008641 | Molecular Function | small protein activating enzyme activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.570 |
| SRR2545915 | Juvenile tuber | 20.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.040 |
| SRR5643514 | five period of Gastrodia elata | 38.270 | |
| SRR5643515 | five period of Gastrodia elata | 34.860 | |
| SRR5643524 | five period of Gastrodia elata | 36.080 | |
| SRR5643525 | five period of Gastrodia elata | 34.240 | |
| SRR5643528 | five period of Gastrodia elata | 30.420 | |
| SRR5643658 | five period of Gastrodia elata | 30.730 | |
| SRR5643659 | five period of Gastrodia elata | 35.250 | |
| SRR5643660 | five period of Gastrodia elata | 35.190 | |
| SRR5643661 | five period of Gastrodia elata | 37.060 | |
| SRR5643662 | five period of Gastrodia elata | 32.580 | |
| SRR5643663 | five period of Gastrodia elata | 32.240 | |
| SRR5643664 | five period of Gastrodia elata | 32.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 46.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 46.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.05 |
| Juven | Juvenile tuber | 40.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.47 | |
| Mother_Juven | Mother tuber of Juvenile | 36.04 |