Detail information of GWHGAAEX005749/evm.TU.scaffold_17.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0760 | 4.00E-147 | Mitochondrial carrier protein MRS3/4 |
| nr | gi|743781939|ref|XP_010921017.1| | 1.17E-176 | PREDICTED: mitoferrin [Elaeis guineensis] |
| Swissprot | tr|F4HT41|SAMC2_ARATH | 2.00E-40 | Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor) |
| trEMBL | tr|M0UAF9|M0UAF9_MUSAM | 1.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP19000_001} |
| TAIR | AT1G07030 | 4.00E-147 | Mitochondrial substrate carrier family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000018 | 3343614 | 3353563 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005749
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00153.26 | Mito_carr | 30 | 120 | 3.10E-20 |
| PF00153.26 | Mito_carr | 125 | 211 | 1.90E-19 |
| PF00153.26 | Mito_carr | 221 | 312 | 6.50E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.350 |
| SRR2545915 | Juvenile tuber | 5.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.440 |
| SRR5643514 | five period of Gastrodia elata | 14.050 | |
| SRR5643515 | five period of Gastrodia elata | 17.630 | |
| SRR5643524 | five period of Gastrodia elata | 13.520 | |
| SRR5643525 | five period of Gastrodia elata | 35.960 | |
| SRR5643528 | five period of Gastrodia elata | 29.240 | |
| SRR5643658 | five period of Gastrodia elata | 25.330 | |
| SRR5643659 | five period of Gastrodia elata | 13.890 | |
| SRR5643660 | five period of Gastrodia elata | 13.580 | |
| SRR5643661 | five period of Gastrodia elata | 15.770 | |
| SRR5643662 | five period of Gastrodia elata | 20.190 | |
| SRR5643663 | five period of Gastrodia elata | 14.880 | |
| SRR5643664 | five period of Gastrodia elata | 23.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.72 |
| Juven | Juvenile tuber | 14.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.51 | |
| Mother_Juven | Mother tuber of Juvenile | 22.97 |